Elarobacter winogradskyi^Ts

Citation

Formal styling

Elarobacter winogradskyi^Ts Ji et al., 2021 (valid 2024)

Effective publication

Ji et al., 2021

SeqCode status

Valid (SeqCode)

Register List

seqco.de/r:tgimo_87 (validated)

Canonical URL

https://seqco.de/i:41727

Nomenclature

Rank

Species

Syllabication

wi.no.grad'skyi

Etymology

N.L. gen. n. winogradskyi, in honor of Sergei Winogradsky, Russian microbiologist and ecologist

Nomenclatural type

NCBI Assembly: GCA_003134965.1

Nomenclatural status

Validly published under the SeqCode

Taxonomy

Description

Obligate heterotroph. CO oxidation. Organic substrates include peptides, amino acids, carboxylates, glycerol, urea, acetate, sarcosine, formate, ethanol, oligosaccharides, sugars, fluoroacetate. Degradation of trehalose (GH15), α-mannoside (GH38), and xyloglucan (GH74). PHA storage; glycogen storage. Polyphosphate storage. Motile by flagella. Also defined based on ANI, and phylogenies of 16S rRNA gene, 15 ribosomal proteins, and the GTDB.

Classification

Bacteria » Eremiobacterota » Eremiobacteria » “Baltobacterales” » “Baltobacteraceae” » Elarobacter » Elarobacter winogradskyi^Ts

Parent

Elarobacter gtdb

Genomics

Accession

NCBI Assembly:GCA_003134965.1

Type

Metagenome-Assembled Genome (MAG)

Estimated Quality Metrics

• Completeness: 96.86%
• Contamination: 0.05%
• Quality: 96.61

Ribosomal and transfer RNA genes

• 1 16S rRNA (up to 40.0%)
• 1 23S rRNA (up to 100.0%)
• tRNAs for 21 amino acids

Sequencing depth

175.0 ×

Source

• BioSample: SAMN08179300
• BioSample: SAMN07124965

Other features

• G+C Content: 67.5%
• Coding Density: 92.53%
• Codon Table: 11
• N50: 1,005,564 bp
• Contigs: 7
• Largest Contig: 1,929,557 bp
• Assembly Length: 4,429,191 bp
• Ambiguous Assembly Fraction: 0.0015%

Automated checks

Complete

See additional details

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Last modified about 1 month ago

Metadata

Outside links and data sources

• GTDB Genome: GCA_003134965.1
• GTDB Tree: s__Elarobacter winogradskyi
• Global Biodiversity Information Facility (GBIF)
• Wikispecies: Elarobacter winogradskyi (see reference source)

Search sequences

• Seach in NCBI Nucleotide

Local history

• This name was last modified 11 days ago
• Submission process status
• Quality checks before valid publication

Registered by

Ferrari, Belinda 3 months ago

Submitted by

Ferrari, Belinda 2 months ago

Curators

• Rodriguez-R, Luis M (genomics)
• Palmer, Marike (nomenclature)

Validated by

Palmer, Marike 11 days ago

Date of priority

2024-10-17 12:47 AM (UTC)