JSON

Genome sc|0003096

Name

Nyctobacter psychrophilusTs

Database

NCBI Assembly

Accession

GCA_014305025.1

Genomics

Accession
NCBI Assembly:GCA_014305025.1
Type
Metagenome-Assembled Genome (MAG)
Estimated Quality Metrics
  • Completeness: 93.15%
  • Contamination: 0.13%
  • Quality: 92.5
Ribosomal and transfer RNA genes
  • 0 16S rRNAs
  • 0 23S rRNAs
  • tRNAs for 21 amino acids
Sequencing depth
7.2 ×
Source
Other features
  • G+C Content: 64.5%
  • Coding Density: 91.23%
  • Codon Table: 11
  • N50: 107,780 bp
  • Contigs: 58
  • Largest Contig: 313,428 bp
  • Assembly Length: 3,222,305 bp
  • Ambiguous Assembly Fraction: 0.0034%
Automated checks
Complete
Last modified over 1 year ago

Sample Metadata

BioSample entries
Date
Collection Date: 2018
Location
Lat Lon: 66° 12′ S, 110° 19′ 12″ E
View map of sampling locations
Toponym
Geo Loc Name: Antarctica
Environment
Sample Type: metagenomic assembly
Isolation Source: Antarctica soil
Env Broad Scale: soil [ENVO:00001998]
Env Local Scale: pingo [ENVO:00000413]
Env Medium: soil [ENVO:00001998]
Other
Depth: 0
Package
Ncbi Submission Package: MIMAG.soil.6.0 • Metagenome.environmental.1.0
Biosamplemodel: MIMAG.soil • Metagenome or environmental
All retrieved samples
Metadata retrieved over 1 year ago


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