Nyctobacter psychrophilus^Ts

Citation

Formal styling

Nyctobacter psychrophilus^Ts Ji et al., 2021 (valid 2024)

Effective publication

Ji et al., 2021

SeqCode status

Valid (SeqCode)

Register List

seqco.de/r:tgimo_87 (validated)

Canonical URL

https://seqco.de/i:42524

Nomenclature

Rank

Species

Syllabication

psy.chro'phi.lus

Etymology

Gr. adj. psychros, cold; Gr. adj. philos, loving; N.L. masc. adj. psychrophilus, cold-loving

Nomenclatural type

NCBI Assembly: GCA_014305025.1

Nomenclatural status

Validly published under the SeqCode

Taxonomy

Description

Heterotroph and autotroph. Hydrogenotrophic chemolithoautotrophy using Group 1h [NiFe] hydrogenase and CBB cycle; capable of using atmospheric H2. Organic substrates include peptides, amino acids, carboxylates, poly- and oligosaccharides, sugars. PHA storage; glycogen storage. Polyphosphate storage. Also defined based on ANI, and phylogenies of 16S rRNA gene, 15 ribosomal proteins, and the GTDB.

Classification

Bacteria » Eremiobacterota » Eremiobacteria » “Baltobacterales” » “Baltobacteraceae” » Nyctobacter » Nyctobacter psychrophilus^Ts

Parent

Nyctobacter gtdb

Genomics

Accession

NCBI Assembly:GCA_014305025.1

Type

Metagenome-Assembled Genome (MAG)

Estimated Quality Metrics

• Completeness: 93.15%
• Contamination: 0.13%
• Quality: 92.5

Ribosomal and transfer RNA genes

• 0 16S rRNAs
• 0 23S rRNAs
• tRNAs for 21 amino acids

Sequencing depth

7.2 ×

Source

• BioSample: SAMN13193749
• And 4 more…

Other features

• G+C Content: 64.5%
• Coding Density: 91.23%
• Codon Table: 11
• N50: 107,780 bp
• Contigs: 58
• Largest Contig: 313,428 bp
• Assembly Length: 3,222,305 bp
• Ambiguous Assembly Fraction: 0.0034%

Automated checks

Complete

See additional details

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Last modified about 1 month ago

Metadata

Outside links and data sources

• GTDB Genome: GCA_014305025.1
• GTDB Tree: s__Nyctobacter psychrophilus
• Global Biodiversity Information Facility (GBIF)
• Wikispecies: Nyctobacter psychrophilus (see reference source)

Search sequences

• Seach in NCBI Nucleotide

Local history

• This name was last modified 11 days ago
• Submission process status
• Quality checks before valid publication

Registered by

Ferrari, Belinda 3 months ago

Submitted by

Ferrari, Belinda 2 months ago

Curators

• Rodriguez-R, Luis M (genomics)
• Palmer, Marike (nomenclature)

Validated by

Palmer, Marike 11 days ago

Date of priority

2024-10-17 12:47 AM (UTC)