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Nyctobacter psychrophilusTs

This name contravenes at least one rule from the SeqCode, and it's at risk of being rejected:
  • Name missing in effective publication: The reported effective publication does not mention this name

Citation

Formal styling
Nyctobacter psychrophilusTs Ji et al., 2021 (priority 2024)
Effective publication
Ji et al., 2021
SeqCode status
Valid (SeqCode)
Register List
seqco.de/r:tgimo_87 (validated)
Canonical URL
https://seqco.de/i:42524

Nomenclature

Rank
Species
Syllabication
psy.chro'phi.lus
Etymology
Gr. adj. psychros, cold; Gr. adj. philos, loving; N.L. masc. adj. psychrophilus, cold-loving
Nomenclatural type
NCBI Assembly: GCA_014305025.1
Nomenclatural status
Validly published under the SeqCode

Taxonomy

Description
Heterotroph and autotroph. Hydrogenotrophic chemolithoautotrophy using Group 1h [NiFe] hydrogenase and CBB cycle; capable of using atmospheric H2. Organic substrates include peptides, amino acids, carboxylates, poly- and oligosaccharides, sugars. PHA storage; glycogen storage. Polyphosphate storage. Also defined based on ANI, and phylogenies of 16S rRNA gene, 15 ribosomal proteins, and the GTDB.
Classification
Bacteria » Eremiobacterota » Eremiobacteria » “Baltobacterales” » “Baltobacteraceae” » Nyctobacter » Nyctobacter psychrophilusTs
Parent
Nyctobacter gtdb

Genomics

Accession
NCBI Assembly:GCA_014305025.1
Type
Metagenome-Assembled Genome (MAG)
Estimated Quality Metrics
  • Completeness: 93.15%
  • Contamination: 0.13%
  • Quality: 92.5
Ribosomal and transfer RNA genes
  • 0 16S rRNAs
  • 0 23S rRNAs
  • tRNAs for 21 amino acids
Sequencing depth
7.2 ×
Source
Other features
  • G+C Content: 64.5%
  • Coding Density: 91.23%
  • Codon Table: 11
  • N50: 107,780 bp
  • Contigs: 58
  • Largest Contig: 313,428 bp
  • Assembly Length: 3,222,305 bp
  • Ambiguous Assembly Fraction: 0.0034%
Automated checks
Complete
See additional details
Last modified over 1 year ago

Metadata

Outside links and data sources
Search sequences
Local history
Registered
Almost 2 years ago by Ferrari, Belinda
Submitted
Almost 2 years ago by Ferrari, Belinda
Curators
Validated
Over 1 year ago by Palmer, Marike
Date of priority
2024-10-17 12:47 AM (UTC)

Publications
1

Citation Title
Ji et al., 2021, The ISME Journal Candidatus Eremiobacterota, a metabolically and phylogenetically diverse terrestrial phylum with acid-tolerant adaptations
Effective publication


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seqco.de/r:tgimo_87