JSON

Genome sc|0000031

Name

Gugararchaeum adminiculabundumTs

Database

NCBI Assembly

Accession

GCA_902384795.1

Genomics

Accession
NCBI Assembly:GCA_902384795.1
Type
Metagenome-Assembled Genome (MAG)
Estimated Quality Metrics
  • Completeness: 96.77%
  • Contamination: 2.15%
  • Quality: 86.02
Ribosomal and transfer RNA genes
  • 1 16S rRNA (up to 66.0%)
  • 1 23S rRNA (up to 100.0%)
  • tRNAs for 21 amino acids
Sequencing depth
11.7 ×
Source
Other features
  • G+C Content: 49.8%
  • Coding Density: 92.49%
  • Codon Table: 11
  • N50: 108,601 bp
  • Contigs: 26
  • Largest Contig: 268,376 bp
  • Assembly Length: 1,472,780 bp
  • Ambiguous Assembly Fraction: 0.0%
Submitter comments
Completeness/redundancy estimates derived from the DPANN93 marker set from Vázquez-Campos et al 2021, adjusted for commonly absent genes in DPANN (also works with other reduced archaeal genomes like in some Thermoplasmatota).
tRNA counts may include iMet, Sec, Ile2 or undetermined aminoacyl types.
rRNA gene completeness/fraction recovered, comes from Barrnap v0.7 (indicates partial fragments but might not discriminate between complete and nearly complete sequences).
Automated checks
Complete
Last modified 11 months ago

Sample Metadata

BioSample entries
Date
Collection Date: 2015 • 9/6/2015 • 27/4/2015 • 23-Apr-2015
Location
Not detected
Toponym
Geographic Location Country And Or Sea: Australia
Geographic Location Region And Locality: New South Wales - Lucas Heights
Environment
Environment Biome: Groundwater
Other
Not detected
Package
Ena Checklist: ERC000011
All retrieved samples
Metadata retrieved 11 months ago


© 2022-2026 The SeqCode Initiative
  All information contributed to the SeqCode Registry is released under the terms of the Creative Commons Attribution (CC BY) 4.0 license
seqco.de/r:nsvepduf