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Gugararchaeum adminiculabundumTs

Citation

Formal styling
Gugararchaeum adminiculabundumTs Vázquez-Campos et al., 2021 (priority 2025)
Effective publication
Vázquez-Campos et al., 2021
SeqCode status
Valid (SeqCode)
Register List
seqco.de/r:nsvepduf (validated)
Canonical URL
https://seqco.de/i:23458

Nomenclature

Rank
Species
Syllabication
ad.mi.ni.cu.la.bun'dum
Etymology
L. neut. adj. adminiculabundum, self-supporting, in reference to the limited external requirements and its suggested independence from a host/symbiote, due to the predicted presence of pathways for the biosynthesis of amino acids, purines, pyrimidines, thiamine, and riboflavin
Nomenclatural type
NCBI Assembly: GCA_902384795.1
Nomenclatural status
Validly published under the SeqCode

Taxonomy

Description
The type material is the metagenome assembled genome (MAG) LFW-121_3 (ERS2655302) recovered from the groundwater of the Little Forest Legacy Site (NSW, Australia). The MAG consists of 1.47 Mbp in 76 contigs with an estimated completeness of 96.8%, redundancy of 2.2%, 16S, 23S, and 5S rRNA gene, and 21 tRNAs. The GC content of this MAG is 49.8%.
The type material appears in GTDB r202 (Parks et al., 2017) as reference for s__CABMDC01 sp902384795.
Classification
Archaea » Microcaldota » Microcaldia » Gugararchaeales » Gugararchaeaceae » Gugararchaeum » Gugararchaeum adminiculabundumTs
Parent
Gugararchaeum gtdb
Pseudonyms
  • CABMDC01 sp902384795 (Alphanumeric placeholder accession)

Genomics

Accession
NCBI Assembly:GCA_902384795.1
Type
Metagenome-Assembled Genome (MAG)
Estimated Quality Metrics
  • Completeness: 96.77%
  • Contamination: 2.15%
  • Quality: 86.02
Ribosomal and transfer RNA genes
  • 1 16S rRNA (up to 66.0%)
  • 1 23S rRNA (up to 100.0%)
  • tRNAs for 21 amino acids
Sequencing depth
11.7 ×
Source
Other features
  • G+C Content: 49.8%
  • Coding Density: 92.49%
  • Codon Table: 11
  • N50: 108,601 bp
  • Contigs: 26
  • Largest Contig: 268,376 bp
  • Assembly Length: 1,472,780 bp
  • Ambiguous Assembly Fraction: 0.0%
Submitter comments
Completeness/redundancy estimates derived from the DPANN93 marker set from Vázquez-Campos et al 2021, adjusted for commonly absent genes in DPANN (also works with other reduced archaeal genomes like in some Thermoplasmatota).
tRNA counts may include iMet, Sec, Ile2 or undetermined aminoacyl types.
rRNA gene completeness/fraction recovered, comes from Barrnap v0.7 (indicates partial fragments but might not discriminate between complete and nearly complete sequences).
Automated checks
Complete
See additional details
Last modified 10 months ago

Metadata

Outside links and data sources
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Local history
Registered
Over 3 years ago by Vázquez-Campos, Xabier
Submitted
7 months ago by Vázquez-Campos, Xabier
Curators
Validated
11 days ago by St. John, Emily
Date of priority
2025-05-22 09:24 AM (UTC)

Publications
1

Citation Title
Vázquez-Campos et al., 2021, Frontiers in Microbiology Genomic Insights Into the Archaea Inhabiting an Australian Radioactive Legacy Site
Effective publication


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seqco.de/r:nsvepduf