Genome sc|0003121

Genomics

Accession

NCBI Assembly:GCA_031254225.1

Type

Metagenome-Assembled Genome (MAG)

Estimated Quality Metrics

• Completeness: 92.13%
• Contamination: 0.0%
• Quality: 92.13

Ribosomal and transfer RNA genes

• 1 16S rRNA (up to 95.0788643533123%)
• 1 23S rRNA (up to 98.9789603960396%)
• tRNAs for 19 amino acids

Sequencing depth

92.0 ×

Source

• BioSample: SAMN21241325
• BioSample: SAMN19322073

Other features

• G+C Content: 47.53%
• Coding Density: 90.76%
• Codon Table: 11
• N50: 15,450 bp
• Contigs: 131
• Largest Contig: 69,635 bp
• Assembly Length: 1,427,733 bp
• Ambiguous Assembly Fraction: 0.0%

Submitter comments

Completeness and contamination assessed with CheckM.

Automated checks

Complete

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Last modified about 1 month ago

Sample Metadata

BioSample entries

• BioSample: SAMN21241325
• BioSample: SAMN19322073

Date

Collection Date: 2016

Location

Lat Lon: 21.625956 N 101.586217 E

Toponym

Geo Loc Name: China: Bubeng

Environment

Sample Type: metagenomic assembly

Isolation Source: termite gut

Env Broad Scale: terrestrial biome

Env Local Scale: woodland biome

Env Medium: tropical woodland biome

Other

Host: Euhamitermes sp.

Package

Ncbi Submission Package: MIMAG.host-associated.6.0 • MIMS.me.host-associated.6.0

Biosamplemodel: MIMAG.host-associated • MIGS/MIMS/MIMARKS.host-associated

All retrieved samples

• SAMN21241325: MIMAG Metagenome-assembled Genome sample from Elusimicrobium sp.
• SAMN19322073: Termite gut metagenome of Euhamitermes sp. from Bubeng, China - Ehx436

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Metadata retrieved about 1 month ago