cultured from healthy chicken ceacum

strain

An273

collection_date

2016

health_state

healthy

isol_growth_condt

missing

ref_biomaterial

missing

env_feature

not applicable

INSDC secondary accession

SRS2048639

rel_to_oxygen

anaerobe

organism

Elusimicrobium sp. An273

biotic_relationship

commensal

NCBI submission package

MIGS.ba.host-associated.5.0

env_material

not applicable

host

Gallus gallus

num_replicons

missing

geo_loc_name

not applicable

host_body_habitat

caecum

env_biome

not applicable

lat_lon

not applicable

isolation_source

caecum

BioSampleModel

MIGS/MIMS/MIMARKS.host-associated

ENA-FIRST-PUBLIC

2017-03-08

ENA-LAST-UPDATE

2017-05-03

Metadata as EBI XML

<EXPERIMENT_SET>
<EXPERIMENT accession="SRX2641120" alias="An273" broker_name="NCBI">
  <IDENTIFIERS>
    <PRIMARY_ID>SRX2641120</PRIMARY_ID>
    <SUBMITTER_ID namespace="SUB2489574">An273</SUBMITTER_ID>
  </IDENTIFIERS>
  <TITLE>WGS on Elusimicrobium_minutum_An273</TITLE>
  <STUDY_REF accession="SRP101913">
    <IDENTIFIERS>
      <PRIMARY_ID>SRP101913</PRIMARY_ID>
      <EXTERNAL_ID namespace="BioProject">PRJNA377666</EXTERNAL_ID>
    </IDENTIFIERS>
  </STUDY_REF>
  <DESIGN>
    <DESIGN_DESCRIPTION>Nextera XT running on NextSeq 500</DESIGN_DESCRIPTION>
    <SAMPLE_DESCRIPTOR accession="SRS2048639">
      <IDENTIFIERS>
        <PRIMARY_ID>SRS2048639</PRIMARY_ID>
        <EXTERNAL_ID namespace="BioSample">SAMN06473703</EXTERNAL_ID>
      </IDENTIFIERS>
    </SAMPLE_DESCRIPTOR>
    <LIBRARY_DESCRIPTOR>
      <LIBRARY_NAME>An273</LIBRARY_NAME>
      <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
      <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
      <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
      <LIBRARY_LAYOUT>
        <PAIRED/>
      </LIBRARY_LAYOUT>
    </LIBRARY_DESCRIPTOR>
  </DESIGN>
  <PLATFORM>
    <ILLUMINA>
      <INSTRUMENT_MODEL>NextSeq 500</INSTRUMENT_MODEL>
    </ILLUMINA>
  </PLATFORM>
  <EXPERIMENT_LINKS>
    <EXPERIMENT_LINK>
      <XREF_LINK>
        <DB>ENA-SAMPLE</DB>
        <ID>SRS2048639</ID>
      </XREF_LINK>
    </EXPERIMENT_LINK>
    <EXPERIMENT_LINK>
      <XREF_LINK>
        <DB>ENA-SUBMISSION</DB>
        <ID>SRA546041</ID>
      </XREF_LINK>
    </EXPERIMENT_LINK>
    <EXPERIMENT_LINK>
      <XREF_LINK>
        <DB>ENA-FASTQ-FILES</DB>
        <ID><![CDATA[https://www.ebi.ac.uk/ena/portal/api/filereport?accession=SRX2641120&result=read_run&fields=run_accession,fastq_ftp,fastq_md5,fastq_bytes]]></ID>
      </XREF_LINK>
    </EXPERIMENT_LINK>
    <EXPERIMENT_LINK>
      <XREF_LINK>
        <DB>ENA-SUBMITTED-FILES</DB>
        <ID><![CDATA[https://www.ebi.ac.uk/ena/portal/api/filereport?accession=SRX2641120&result=read_run&fields=run_accession,submitted_ftp,submitted_md5,submitted_bytes,submitted_format]]></ID>
      </XREF_LINK>
    </EXPERIMENT_LINK>
  </EXPERIMENT_LINKS>
</EXPERIMENT>
</EXPERIMENT_SET>