Genome sc|0003198


Database

NCBI Assembly

Accession

GCA_029989365.1

Typification

Nomenclatural type of:

Genomics

Accession
NCBI Assembly:GCA_029989365.1
Cultures
Strain sc|0038862
Type
Isolate Genome
Estimated Quality Metrics
  • Completeness: 98.75%
  • Contamination: 0.47%
  • Quality: 96.4
Ribosomal and transfer RNA genes
  • 6 16S rRNAs (up to 100.0%)
  • 4 23S rRNAs (up to 100.0%)
  • tRNAs for 21 amino acids
Sequencing depth
82.48 ×
Source
Other features
  • G+C Content: 63.16%
  • Coding Density: 83.55%
  • Codon Table: 11
  • N50: 344,780 bp
  • Contigs: 277
  • Largest Contig: 1,094,147 bp
  • Assembly Length: 9,704,017 bp
  • Ambiguous Assembly Fraction: 0.0%
Submitter comments
Genome quality assessment obtained using QUAST and MIGA, assembly statistics and read quality with BBTools, checkm2 used for contamination and completeness checks. Number of 16S rRNA and 23rRNA gene fragments and tRNA confirmed through screening NCBI genome annotations
Automated checks
Complete

Last modified 10 days ago

Sample Metadata

BioSample entries
Date
Collection Date: 2019-10-30
Location
Not detected
Toponym
Geo Loc Name: South Africa
Environment
Sample Type: culture
Isolation Source: root nodules
Other
Host: Argyrolobium harveyanum
Package
Not detected
All retrieved samples

Metadata retrieved 10 days ago

Sequencing Experiments

Arg816


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