Bradyrhizobium mpumalangense


Citation

Formal styling
Bradyrhizobium mpumalangense Maake et al., 2026
Effective publication
Maake et al., 2026
SeqCode status
Valid (SeqCode)
Register List
seqco.de/r:btxzyjob (validated)
Canonical URL
https://seqco.de/i:46769

Nomenclature

Rank
Species
Syllabication
mpu.ma.lan.gen'se
Etymology
N.L. neut. adj. mpumalangense, pertaining to Mpumalanga, the region where the reference strain was isolated
Nomenclatural type
NCBI Assembly: GCA_029990105.1
Reference strain
Strain sc|0038743: Arg237L Lookup StrainInfo
Nomenclatural status
Validly published under the SeqCode

Taxonomy

Description
Cells are gram-negative motile rods ranging from 0.577 to 0.603 µm (in length) to 0.166 to 0.177 µm (in width). Colonies were medium in size, ranging between 1mm and 2mm at 7 days, are circular, opaque, pulvinate, smooth, opaque, and slimy. Colonies also produced an alkaline reaction in YMA with bromothymol blue as an indicator. The reference strain grows at a pH range of 5 to 10, temperature range of 25 to 30 °C, with optimum growth at 25 and 28 °C and tolerates up to 0.5% (w/v) NaCl. It assimilates Urease, esculin ferric citrate, β-galactosidase, L-arabinose, D-mannose, D-mannitol, D-maltose, adipic acid, Malic acid, Trisodium citrate, and N-acetyl-glucosamine, but does not assimilate indole, D-glucose, L-arginine, gelatin, potassium gluconate, Capric acid, and Phenylacetic acid. This strain can reduce nitrates to nitrite and nitrogen. In terms of the biology tests, Arg237L was reported negative for Dextrin, D-Maltose, D-Trehalose, D-Cellobiose, Gentiobiose, Sucrose, D-Turanose, Stachyose, D-Raffinose, α-D-Lactose, D-Melibiose, β-Methyl-D-Glucoside, D-Salicin, N-Acetyl-D-Glucosamine, N-Acetyl-β-D-Mannosamine, N-Acetyl-D-Galactosamine, N-Acetyl Neuraminic Acid, D-Fructose, 3-Methyl Glucose, Inosine, D-Sorbitol, myo-Inositol, Glycerol, D-Glucose6-PO4, D-Fructose6-PO4, L-Histidine, D-Aspartic Acid, D-Serine, Gelatin, Glycyl-L-Proline, L-Alanine, L-Arginine, L-Aspartic Acid, L-Glutamic Acid, L-Serine, Pectin, D-Gluconic Acid, Quinic Acid, Lithium Chloride, Guanidine HCl, D-Lactic Acid Methyl Ester, Citric Acid, D-Galacturonic Acid, Tween 40, γ-Amino-Butryric Acid, α-Hydroxy-Butyric Acid, α-Keto-Butyric Acid, Propionic Acid, and Sodium Bromate, weakly  positive for D-Galactose, α-D-Glucose, D-Mannose, L-Fucose, L-Rhamnose, D-Mannitol, D-Arabitol, Fusidic Acid, Minocycline, Troleandomycin, L-Pyroglutamic Acid, Niaproof 4, Bromo-Succinic Acid,  L-Galactonic Acid Lactone, D-Glucuronic Acid, Glucuronamide, Mucic Acid, Tetrazolium Blue, p-Hydroxy-Phenylacetic Acid, Vancomycin, , α-Keto-Glutaric Acid, Acetoacetic Acid, L-Malic Acid, Methyl Pyruvate, D-Malic Acid, Potassium Tellurite, Acetic Acid, and Sodium Butyrate, and Positive for D-Fucose, 1% Sodium Lactate, Rifamycin SV, Tetrazolium Violet, Lincomycin, D-Saccharic Acid, L-Lactic Acid, Nalidixic Acid, β-Hydroxy-D, L-Butyric Acid,  Aztreonam, and Formic Acid. 
Classification
Bacteria » Pseudomonadota » Alphaproteobacteria » Hyphomicrobiales » Nitrobacteraceae » Bradyrhizobium » Bradyrhizobium mpumalangense
Parent
Bradyrhizobium

Genomics

Accession
NCBI Assembly:GCA_029990105.1
Cultures
Strain sc|0038743
Type
Isolate Genome
Estimated Quality Metrics
  • Completeness: 100.0%
  • Contamination: 1.06%
  • Quality: 94.7
Ribosomal and transfer RNA genes
  • 1 16S rRNA (up to 100.0%)
  • 1 23S rRNA (up to 100.0%)
  • tRNAs for 21 amino acids
Sequencing depth
165.0 ×
Source
Other features
  • G+C Content: 62.5%
  • Coding Density: 85.44%
  • Codon Table: 11
  • N50: 91,003 bp
  • Contigs: 289
  • Largest Contig: 240,991 bp
  • Assembly Length: 9,335,704 bp
  • Ambiguous Assembly Fraction: 0.0%
Submitter comments
contamination and completeness checks in checkM2, genome statistics and assembly coverage using QUAST, BBTOOlS,MiGA and checked tRNA elements using NCBI refseq annotation
Automated checks
Complete

Last modified 10 days ago

Metadata

Outside links and data sources
Search sequences
Local history
Registered
About 2 years ago by Maake, Mabodiba Masutane
Submitted
Over 1 year ago by Maake, Mabodiba Masutane
Curators
Endorsed
Over 1 year ago by Chuvochina, Maria
Validated
1 day ago by St. John, Emily
Date of priority
2026-08-04 04:29 PM (UTC)

Publications
1

Citation Title
Maake et al., 2026, Molecular Phylogenetics and Evolution Argyrolobium legumes from an African centre of endemism associate with novel Bradyrhizobium species harbouring unique sets of symbiosis genes
Effective publication



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