Keywords: GSC:MIxS;MIMAG:6.0

BioSample Accession(s)

SAMN25126233,

isolate

XCD35.Bin11

collection_date

2016-11

depth

0-5cm

elev

3400

env_broad_scale

sediment biome

env_local_scale

shoreline

env_medium

sediment

geo_loc_name

China:Qinghai,Xiaochaidan Lake

isolation_source

Tibetan lacustrine sediment

lat_lon

37.46 N 95.54 E

metagenomic

1

environmental-sample

1

sample_type

metagenomic assembly

metagenome_source

sediment metagenome

derived_from

SAMN26011975

ncbi_package

MIMAG.sediment.6.0

Keywords: GSC:MIxS;MIMS:6.0

BioSample Accession(s)

SAMN26011975,

collection_date

2016-11

depth

0-5 cm

elev

3400

env_broad_scale

sediment biome

env_local_scale

shoreline

env_medium

sediment

geo_loc_name

China:Qinghai,Xiaochaidan Lake

isolation_source

Tibetan lacustrine sediment

lat_lon

37.46 N 95.54 E

ncbi_package

MIMS.me.sediment.6.0

BioSample Accession(s)

SAMN42272317, SRS21891065

collection_date

2016-11-13

INSDC secondary accession

SRS21891065

NCBI submission package

Metagenome.environmental.1.0

organism

sediment metagenome

geo_loc_name

China:Qinghai-Tibet Plateau-Xiaochaidan lake

lat_lon

37.297 N 95.258 E

isolation_source

brackish water lake

BioSampleModel

Metagenome or environmental

ENA-FIRST-PUBLIC

2024-07-23

ENA-LAST-UPDATE

2024-07-23

Metadata as EBI XML

<EXPERIMENT_SET>
<EXPERIMENT accession="SRX25202636" alias="XCD35" center_name="SUB14582042" broker_name="NCBI">
  <IDENTIFIERS>
    <PRIMARY_ID>SRX25202636</PRIMARY_ID>
    <SUBMITTER_ID namespace="SUB14582042">XCD35</SUBMITTER_ID>
  </IDENTIFIERS>
  <TITLE>metagenomic:Xiaochaidan lake sediment</TITLE>
  <STUDY_REF accession="SRP517849">
    <IDENTIFIERS>
      <PRIMARY_ID>SRP517849</PRIMARY_ID>
      <SUBMITTER_ID namespace="SUB14582042">bp0</SUBMITTER_ID>
    </IDENTIFIERS>
  </STUDY_REF>
  <DESIGN>
    <DESIGN_DESCRIPTION>DNA concentrations of the extract and constructed libraries (with insert size of 371 bp) were measured with a Qubit fluorometer.</DESIGN_DESCRIPTION>
    <SAMPLE_DESCRIPTOR accession="SRS21891065">
      <IDENTIFIERS>
        <PRIMARY_ID>SRS21891065</PRIMARY_ID>
        <EXTERNAL_ID namespace="BioSample">SAMN42272317</EXTERNAL_ID>
      </IDENTIFIERS>
    </SAMPLE_DESCRIPTOR>
    <LIBRARY_DESCRIPTOR>
      <LIBRARY_NAME>XCD35</LIBRARY_NAME>
      <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
      <LIBRARY_SOURCE>METAGENOMIC</LIBRARY_SOURCE>
      <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
      <LIBRARY_LAYOUT>
        <PAIRED/>
      </LIBRARY_LAYOUT>
    </LIBRARY_DESCRIPTOR>
  </DESIGN>
  <PLATFORM>
    <ILLUMINA>
      <INSTRUMENT_MODEL>Illumina HiSeq 4000</INSTRUMENT_MODEL>
    </ILLUMINA>
  </PLATFORM>
  <EXPERIMENT_LINKS>
    <EXPERIMENT_LINK>
      <XREF_LINK>
        <DB>ENA-SAMPLE</DB>
        <ID>SRS21891065</ID>
      </XREF_LINK>
    </EXPERIMENT_LINK>
    <EXPERIMENT_LINK>
      <XREF_LINK>
        <DB>ENA-SUBMISSION</DB>
        <ID>SRA1916582</ID>
      </XREF_LINK>
    </EXPERIMENT_LINK>
    <EXPERIMENT_LINK>
      <XREF_LINK>
        <DB>ENA-FASTQ-FILES</DB>
        <ID><![CDATA[https://www.ebi.ac.uk/ena/portal/api/filereport?accession=SRX25202636&result=read_run&fields=run_accession,fastq_ftp,fastq_md5,fastq_bytes]]></ID>
      </XREF_LINK>
    </EXPERIMENT_LINK>
    <EXPERIMENT_LINK>
      <XREF_LINK>
        <DB>ENA-SUBMITTED-FILES</DB>
        <ID><![CDATA[https://www.ebi.ac.uk/ena/portal/api/filereport?accession=SRX25202636&result=read_run&fields=run_accession,submitted_ftp,submitted_md5,submitted_bytes,submitted_format]]></ID>
      </XREF_LINK>
    </EXPERIMENT_LINK>
  </EXPERIMENT_LINKS>
  <EXPERIMENT_ATTRIBUTES>
    <EXPERIMENT_ATTRIBUTE>
      <TAG>ENA-STATUS-ID</TAG>
      <VALUE>4</VALUE>
    </EXPERIMENT_ATTRIBUTE>
  </EXPERIMENT_ATTRIBUTES>
</EXPERIMENT>
</EXPERIMENT_SET>