BioSample Accession(s)

SAMEA6872857, ERS4600421

geographic location (depth)

1

environment (material)

water

sulfate

1.248

ferric iron

0

collection date

2018-07-27

ferrous iron

5.806913769

ammonium

0.332612672542824

geographic location (longitude)

20.36911111111111

nitrate

0.935409943407698

water environmental package

water

sample owner

Gaetan Martin

ENA-FIRST-PUBLIC

2020-06-15

ENA-LAST-UPDATE

2020-06-18

pH

5.72

temperature

20.1

collection data

metagenome

environment (biome)

lentic water body

Lake_code

Ki2

oxygen

8.4

environment (feature)

lake

geographic location (country and/or sea)

Sweden

ENA-CHECKLIST

ERC000024

organism

lake water metagenome

phosphate

0.010529485718859

Run

R2

dissolved carbon dioxide

18.21803276

geographic location (latitude)

67.92330555555556

scientific_name

lake water metagenome

common name

investigation type

metagenome

swedish lake code

754378-169136

nitrite

0

project name

microbes in stratified freshwaters

sequencing method

NovaSeq

methane

1.745905342

iron

5.806913769

region

Kiruna

total dissolved nitrogen

280

dissolved organic carbon

615.284704471846

site name

Ki2

BioSample Accession(s)

SAMEA6872858, ERS4600422

geographic location (depth)

3.9

environment (material)

water

sulfate

1.43

ferric iron

9.141605002

collection date

2018-07-27

ferrous iron

3.574793073

ammonium

0.83153168135706

geographic location (longitude)

20.36911111111111

nitrate

1.04830424692242

water environmental package

water

sample owner

Gaetan Martin

ENA-FIRST-PUBLIC

2020-06-15

ENA-LAST-UPDATE

2020-06-18

pH

4.98

temperature

8

collection data

metagenome

environment (biome)

lentic water body

Lake_code

Ki2

oxygen

0.3

environment (feature)

lake

geographic location (country and/or sea)

Sweden

ENA-CHECKLIST

ERC000024

organism

lake water metagenome

phosphate

0.042117942875434

Run

R2

dissolved carbon dioxide

207.0982629

geographic location (latitude)

67.92330555555556

scientific_name

lake water metagenome

common name

investigation type

metagenome

swedish lake code

754378-169136

project name

microbes in stratified freshwaters

sequencing method

NovaSeq

methane

0.769609384

iron

12.71639808

region

Kiruna

total dissolved nitrogen

260

dissolved organic carbon

581.148475942285

site name

Ki2

BioSample Accession(s)

SAMEA6872859, ERS4600423

geographic location (depth)

4.2

environment (material)

water

sulfate

1.411

ferric iron

0

collection date

2018-07-27

ferrous iron

31.5215306

ammonium

2.49459504407118

geographic location (longitude)

20.36911111111111

nitrate

0.51608824463873

water environmental package

water

sample owner

Gaetan Martin

ENA-FIRST-PUBLIC

2020-06-15

ENA-LAST-UPDATE

2020-06-18

pH

5.01

temperature

7.4

collection data

metagenome

environment (biome)

lentic water body

Lake_code

Ki2

oxygen

0

environment (feature)

lake

geographic location (country and/or sea)

Sweden

ENA-CHECKLIST

ERC000024

organism

lake water metagenome

phosphate

0.042117942875434

Run

R2

dissolved carbon dioxide

201.0445921

geographic location (latitude)

67.92330555555556

scientific_name

lake water metagenome

common name

investigation type

metagenome

swedish lake code

754378-169136

nitrite

0

project name

microbes in stratified freshwaters

sequencing method

NovaSeq

methane

1.334685179

iron

31.5215306

region

Kiruna

total dissolved nitrogen

310

dissolved organic carbon

623.6106138693

site name

Ki2

BioSample Accession(s)

SAMEA6872860, ERS4600424

geographic location (depth)

5.5

environment (material)

water

sulfate

1.302

ferric iron

40.07239293

collection date

2018-07-27

ferrous iron

8.732439203

ammonium

43.2396474305671

geographic location (longitude)

20.36911111111111

nitrate

0.564471517573611

water environmental package

water

sample owner

Gaetan Martin

ENA-FIRST-PUBLIC

2020-06-15

ENA-LAST-UPDATE

2020-06-18

pH

6.06

temperature

5

collection data

metagenome

environment (biome)

lentic water body

Lake_code

Ki2

oxygen

0

environment (feature)

lake

geographic location (country and/or sea)

Sweden

ENA-CHECKLIST

ERC000024

organism

lake water metagenome

phosphate

0.021058971437717

Run

R2

dissolved carbon dioxide

460.155006

geographic location (latitude)

67.92330555555556

scientific_name

lake water metagenome

common name

investigation type

metagenome

swedish lake code

754378-169136

project name

microbes in stratified freshwaters

sequencing method

NovaSeq

methane

114.2290404

iron

48.80483213

region

Kiruna

total dissolved nitrogen

980

dissolved organic carbon

849.242758540302

site name

Ki2

Metadata as EBI XML

<EXPERIMENT_SET>
<EXPERIMENT accession="ERX4155208" alias="webin-reads-microbes_in_stratified_freshwaters_-_lake_754378-169136_sample_Ki2-D1" center_name="Department of Aquatic Sciences and Assessment">
  <IDENTIFIERS>
    <PRIMARY_ID>ERX4155208</PRIMARY_ID>
    <SUBMITTER_ID namespace="Department of Aquatic Sciences and Assessment">webin-reads-microbes_in_stratified_freshwaters_-_lake_754378-169136_sample_Ki2-D1</SUBMITTER_ID>
  </IDENTIFIERS>
  <TITLE>Raw reads: microbes_in_stratified_freshwaters_-_lake_754378-169136_sample_Ki2-D1</TITLE>
  <STUDY_REF accession="ERP122124">
    <IDENTIFIERS>
      <PRIMARY_ID>ERP122124</PRIMARY_ID>
      <SECONDARY_ID>PRJEB38681</SECONDARY_ID>
    </IDENTIFIERS>
  </STUDY_REF>
  <DESIGN>
    <DESIGN_DESCRIPTION>unspecified</DESIGN_DESCRIPTION>
    <SAMPLE_DESCRIPTOR accession="ERS4600421">
      <IDENTIFIERS>
        <PRIMARY_ID>ERS4600421</PRIMARY_ID>
        <EXTERNAL_ID namespace="BioSample">SAMEA6872857</EXTERNAL_ID>
      </IDENTIFIERS>
    </SAMPLE_DESCRIPTOR>
    <LIBRARY_DESCRIPTOR>
      <LIBRARY_NAME>lake 754378-169136 sample Ki2-D1</LIBRARY_NAME>
      <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
      <LIBRARY_SOURCE>METAGENOMIC</LIBRARY_SOURCE>
      <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
      <LIBRARY_LAYOUT>
        <PAIRED/>
      </LIBRARY_LAYOUT>
    </LIBRARY_DESCRIPTOR>
  </DESIGN>
  <PLATFORM>
    <ILLUMINA>
      <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL>
    </ILLUMINA>
  </PLATFORM>
  <EXPERIMENT_LINKS>
    <EXPERIMENT_LINK>
      <XREF_LINK>
        <DB>ENA-SAMPLE</DB>
        <ID>ERS4600421</ID>
      </XREF_LINK>
    </EXPERIMENT_LINK>
    <EXPERIMENT_LINK>
      <XREF_LINK>
        <DB>ENA-SUBMISSION</DB>
        <ID>ERA2667909</ID>
      </XREF_LINK>
    </EXPERIMENT_LINK>
    <EXPERIMENT_LINK>
      <XREF_LINK>
        <DB>ENA-FASTQ-FILES</DB>
        <ID><![CDATA[https://www.ebi.ac.uk/ena/portal/api/filereport?accession=ERX4155208&result=read_run&fields=run_accession,fastq_ftp,fastq_md5,fastq_bytes]]></ID>
      </XREF_LINK>
    </EXPERIMENT_LINK>
    <EXPERIMENT_LINK>
      <XREF_LINK>
        <DB>ENA-SUBMITTED-FILES</DB>
        <ID><![CDATA[https://www.ebi.ac.uk/ena/portal/api/filereport?accession=ERX4155208&result=read_run&fields=run_accession,submitted_ftp,submitted_md5,submitted_bytes,submitted_format]]></ID>
      </XREF_LINK>
    </EXPERIMENT_LINK>
  </EXPERIMENT_LINKS>
</EXPERIMENT>
</EXPERIMENT_SET>

Metadata as EBI XML

<EXPERIMENT_SET>
<EXPERIMENT accession="ERX4156093" alias="webin-reads-microbes_in_stratified_freshwaters_-_lake_754378-169136_sample_Ki2-D2" center_name="Department of Aquatic Sciences and Assessment">
  <IDENTIFIERS>
    <PRIMARY_ID>ERX4156093</PRIMARY_ID>
    <SUBMITTER_ID namespace="Department of Aquatic Sciences and Assessment">webin-reads-microbes_in_stratified_freshwaters_-_lake_754378-169136_sample_Ki2-D2</SUBMITTER_ID>
  </IDENTIFIERS>
  <TITLE>Raw reads: microbes_in_stratified_freshwaters_-_lake_754378-169136_sample_Ki2-D2</TITLE>
  <STUDY_REF accession="ERP122124">
    <IDENTIFIERS>
      <PRIMARY_ID>ERP122124</PRIMARY_ID>
      <SECONDARY_ID>PRJEB38681</SECONDARY_ID>
    </IDENTIFIERS>
  </STUDY_REF>
  <DESIGN>
    <DESIGN_DESCRIPTION>unspecified</DESIGN_DESCRIPTION>
    <SAMPLE_DESCRIPTOR accession="ERS4600422">
      <IDENTIFIERS>
        <PRIMARY_ID>ERS4600422</PRIMARY_ID>
        <EXTERNAL_ID namespace="BioSample">SAMEA6872858</EXTERNAL_ID>
      </IDENTIFIERS>
    </SAMPLE_DESCRIPTOR>
    <LIBRARY_DESCRIPTOR>
      <LIBRARY_NAME>lake 754378-169136 sample Ki2-D2</LIBRARY_NAME>
      <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
      <LIBRARY_SOURCE>METAGENOMIC</LIBRARY_SOURCE>
      <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
      <LIBRARY_LAYOUT>
        <PAIRED/>
      </LIBRARY_LAYOUT>
    </LIBRARY_DESCRIPTOR>
  </DESIGN>
  <PLATFORM>
    <ILLUMINA>
      <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL>
    </ILLUMINA>
  </PLATFORM>
  <EXPERIMENT_LINKS>
    <EXPERIMENT_LINK>
      <XREF_LINK>
        <DB>ENA-SAMPLE</DB>
        <ID>ERS4600422</ID>
      </XREF_LINK>
    </EXPERIMENT_LINK>
    <EXPERIMENT_LINK>
      <XREF_LINK>
        <DB>ENA-SUBMISSION</DB>
        <ID>ERA2668166</ID>
      </XREF_LINK>
    </EXPERIMENT_LINK>
    <EXPERIMENT_LINK>
      <XREF_LINK>
        <DB>ENA-FASTQ-FILES</DB>
        <ID><![CDATA[https://www.ebi.ac.uk/ena/portal/api/filereport?accession=ERX4156093&result=read_run&fields=run_accession,fastq_ftp,fastq_md5,fastq_bytes]]></ID>
      </XREF_LINK>
    </EXPERIMENT_LINK>
    <EXPERIMENT_LINK>
      <XREF_LINK>
        <DB>ENA-SUBMITTED-FILES</DB>
        <ID><![CDATA[https://www.ebi.ac.uk/ena/portal/api/filereport?accession=ERX4156093&result=read_run&fields=run_accession,submitted_ftp,submitted_md5,submitted_bytes,submitted_format]]></ID>
      </XREF_LINK>
    </EXPERIMENT_LINK>
  </EXPERIMENT_LINKS>
</EXPERIMENT>
</EXPERIMENT_SET>

Metadata as EBI XML

<EXPERIMENT_SET>
<EXPERIMENT accession="ERX4156092" alias="webin-reads-microbes_in_stratified_freshwaters_-_lake_754378-169136_sample_Ki2-D3" center_name="Department of Aquatic Sciences and Assessment">
  <IDENTIFIERS>
    <PRIMARY_ID>ERX4156092</PRIMARY_ID>
    <SUBMITTER_ID namespace="Department of Aquatic Sciences and Assessment">webin-reads-microbes_in_stratified_freshwaters_-_lake_754378-169136_sample_Ki2-D3</SUBMITTER_ID>
  </IDENTIFIERS>
  <TITLE>Raw reads: microbes_in_stratified_freshwaters_-_lake_754378-169136_sample_Ki2-D3</TITLE>
  <STUDY_REF accession="ERP122124">
    <IDENTIFIERS>
      <PRIMARY_ID>ERP122124</PRIMARY_ID>
      <SECONDARY_ID>PRJEB38681</SECONDARY_ID>
    </IDENTIFIERS>
  </STUDY_REF>
  <DESIGN>
    <DESIGN_DESCRIPTION>unspecified</DESIGN_DESCRIPTION>
    <SAMPLE_DESCRIPTOR accession="ERS4600423">
      <IDENTIFIERS>
        <PRIMARY_ID>ERS4600423</PRIMARY_ID>
        <EXTERNAL_ID namespace="BioSample">SAMEA6872859</EXTERNAL_ID>
      </IDENTIFIERS>
    </SAMPLE_DESCRIPTOR>
    <LIBRARY_DESCRIPTOR>
      <LIBRARY_NAME>lake 754378-169136 sample Ki2-D3</LIBRARY_NAME>
      <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
      <LIBRARY_SOURCE>METAGENOMIC</LIBRARY_SOURCE>
      <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
      <LIBRARY_LAYOUT>
        <PAIRED/>
      </LIBRARY_LAYOUT>
    </LIBRARY_DESCRIPTOR>
  </DESIGN>
  <PLATFORM>
    <ILLUMINA>
      <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL>
    </ILLUMINA>
  </PLATFORM>
  <EXPERIMENT_LINKS>
    <EXPERIMENT_LINK>
      <XREF_LINK>
        <DB>ENA-SAMPLE</DB>
        <ID>ERS4600423</ID>
      </XREF_LINK>
    </EXPERIMENT_LINK>
    <EXPERIMENT_LINK>
      <XREF_LINK>
        <DB>ENA-SUBMISSION</DB>
        <ID>ERA2668165</ID>
      </XREF_LINK>
    </EXPERIMENT_LINK>
    <EXPERIMENT_LINK>
      <XREF_LINK>
        <DB>ENA-FASTQ-FILES</DB>
        <ID><![CDATA[https://www.ebi.ac.uk/ena/portal/api/filereport?accession=ERX4156092&result=read_run&fields=run_accession,fastq_ftp,fastq_md5,fastq_bytes]]></ID>
      </XREF_LINK>
    </EXPERIMENT_LINK>
    <EXPERIMENT_LINK>
      <XREF_LINK>
        <DB>ENA-SUBMITTED-FILES</DB>
        <ID><![CDATA[https://www.ebi.ac.uk/ena/portal/api/filereport?accession=ERX4156092&result=read_run&fields=run_accession,submitted_ftp,submitted_md5,submitted_bytes,submitted_format]]></ID>
      </XREF_LINK>
    </EXPERIMENT_LINK>
  </EXPERIMENT_LINKS>
</EXPERIMENT>
</EXPERIMENT_SET>

Metadata as EBI XML

<EXPERIMENT_SET>
<EXPERIMENT accession="ERX4155238" alias="webin-reads-microbes_in_stratified_freshwaters_-_lake_754378-169136_sample_Ki2-D4" center_name="Department of Aquatic Sciences and Assessment">
  <IDENTIFIERS>
    <PRIMARY_ID>ERX4155238</PRIMARY_ID>
    <SUBMITTER_ID namespace="Department of Aquatic Sciences and Assessment">webin-reads-microbes_in_stratified_freshwaters_-_lake_754378-169136_sample_Ki2-D4</SUBMITTER_ID>
  </IDENTIFIERS>
  <TITLE>Raw reads: microbes_in_stratified_freshwaters_-_lake_754378-169136_sample_Ki2-D4</TITLE>
  <STUDY_REF accession="ERP122124">
    <IDENTIFIERS>
      <PRIMARY_ID>ERP122124</PRIMARY_ID>
      <SECONDARY_ID>PRJEB38681</SECONDARY_ID>
    </IDENTIFIERS>
  </STUDY_REF>
  <DESIGN>
    <DESIGN_DESCRIPTION>unspecified</DESIGN_DESCRIPTION>
    <SAMPLE_DESCRIPTOR accession="ERS4600424">
      <IDENTIFIERS>
        <PRIMARY_ID>ERS4600424</PRIMARY_ID>
        <EXTERNAL_ID namespace="BioSample">SAMEA6872860</EXTERNAL_ID>
      </IDENTIFIERS>
    </SAMPLE_DESCRIPTOR>
    <LIBRARY_DESCRIPTOR>
      <LIBRARY_NAME>lake 754378-169136 sample Ki2-D4</LIBRARY_NAME>
      <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
      <LIBRARY_SOURCE>METAGENOMIC</LIBRARY_SOURCE>
      <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
      <LIBRARY_LAYOUT>
        <PAIRED/>
      </LIBRARY_LAYOUT>
    </LIBRARY_DESCRIPTOR>
  </DESIGN>
  <PLATFORM>
    <ILLUMINA>
      <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL>
    </ILLUMINA>
  </PLATFORM>
  <EXPERIMENT_LINKS>
    <EXPERIMENT_LINK>
      <XREF_LINK>
        <DB>ENA-SAMPLE</DB>
        <ID>ERS4600424</ID>
      </XREF_LINK>
    </EXPERIMENT_LINK>
    <EXPERIMENT_LINK>
      <XREF_LINK>
        <DB>ENA-SUBMISSION</DB>
        <ID>ERA2667938</ID>
      </XREF_LINK>
    </EXPERIMENT_LINK>
    <EXPERIMENT_LINK>
      <XREF_LINK>
        <DB>ENA-FASTQ-FILES</DB>
        <ID><![CDATA[https://www.ebi.ac.uk/ena/portal/api/filereport?accession=ERX4155238&result=read_run&fields=run_accession,fastq_ftp,fastq_md5,fastq_bytes]]></ID>
      </XREF_LINK>
    </EXPERIMENT_LINK>
    <EXPERIMENT_LINK>
      <XREF_LINK>
        <DB>ENA-SUBMITTED-FILES</DB>
        <ID><![CDATA[https://www.ebi.ac.uk/ena/portal/api/filereport?accession=ERX4155238&result=read_run&fields=run_accession,submitted_ftp,submitted_md5,submitted_bytes,submitted_format]]></ID>
      </XREF_LINK>
    </EXPERIMENT_LINK>
  </EXPERIMENT_LINKS>
</EXPERIMENT>
</EXPERIMENT_SET>