Genome sc|0000336


Database

NCBI Assembly

Accession

GCA_028283245.1

Genomics

Accession
NCBI Assembly:GCA_028283245.1
Type
Metagenome-Assembled Genome (MAG)
Estimated Quality Metrics
  • Completeness: 92.31%
  • Contamination: 0.85%
  • Quality: 88.06
Ribosomal and transfer RNA genes
  • 1 16S rRNA (up to 80.0%)
  • 0 23S rRNAs
  • tRNAs for 20 amino acids
Sequencing depth
15.0 ×
Source
Other features
  • G+C Content: 57.59%
  • Coding Density: 91.84%
  • Codon Table: 11
  • N50: 36,208 bp
  • Contigs: 104
  • Largest Contig: 124,589 bp
  • Assembly Length: 2,593,093 bp
  • Ambiguous Assembly Fraction: 0.0016%
Submitter comments
Completeness and contamination were assessed with CheckM v1.1.0 using a lineage-specific workflow.

JAPYNU000000000, which is the proposed type genome of this species has an incomplete 16S rRNA genome. We have not been able to assemble a better 16S rRNA gene sequence for this species, including the three other genomes we have for the species (see linked publication for details).
Automated checks
Complete

Sample Metadata

Date
Collection Date: 2014-06
Location
Lat Lon: 18.816 S 147.633 E
Toponym
Geo Loc Name: Australia: Davies Reef, Great Barrier Reef
Environment
Sample Type: metagenomic assembly
Isolation Source: sponge tissue, low temperature high CO2
Env Broad Scale: coral reef [ENVO:00000150]
Env Local Scale: coral reef [ENVO:00000150]
Env Medium: sponge
Other
Host: Phyllospongia foliascens
Package
Ncbi Submission Package: MIMAG.host-associated.6.0
Biosamplemodel: MIMAG.host-associated
Additional Accessions
SAMN13227200, SAMN13227201, SAMN13227207
All retrieved samples

Metadata retrieved 5 months ago


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