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Aldehydirespirator catecholifindensTs

Citation

Formal styling
Aldehydirespirator catecholifindensTs Nguyen et al., 2023
Effective publication
Nguyen et al., 2023
SeqCode status
Valid (SeqCode)
Register List
seqco.de/r:v1sky3wb (validated)
Canonical URL
https://seqco.de/i:24017

Nomenclature

Rank
Species
Syllabication
ca.te.cho.li.fin'dens
Etymology
N.L. neut. n. catecholum, catechol; L. v. findo, to split; N.L. masc. part. adj. catecholifindens, one with the ability to split catechols
Nomenclatural type
NCBI Assembly: GCA_028283245.1
Nomenclatural status
Validly published under the SeqCode

Taxonomy

Description
Sponge-derived acidimicrobiial species with the predicted capability to degrade catechol. Its electron transport chain may also rely on acetaldehyde reduction for menaquinol/menaquinone cycling 
Classification
Bacteria » Actinomycetota » Acidimicrobiia » Acidimicrobiales » Aldehydirespiratoraceae » Aldehydirespirator » Aldehydirespirator catecholifindensTs
Parent
Aldehydirespirator gtdb

Genomics

Accession
NCBI Assembly:GCA_028283245.1
Type
Metagenome-Assembled Genome (MAG)
Estimated Quality Metrics
  • Completeness: 92.31%
  • Contamination: 0.85%
  • Quality: 88.06
Ribosomal and transfer RNA genes
  • 1 16S rRNA (up to 80.0%)
  • 0 23S rRNAs
  • tRNAs for 20 amino acids
Sequencing depth
15.0 ×
Source
Other features
  • G+C Content: 57.59%
  • Coding Density: 91.84%
  • Codon Table: 11
  • N50: 36,208 bp
  • Contigs: 104
  • Largest Contig: 124,589 bp
  • Assembly Length: 2,593,093 bp
  • Ambiguous Assembly Fraction: 0.0016%
Submitter comments
Completeness and contamination were assessed with CheckM v1.1.0 using a lineage-specific workflow.

JAPYNU000000000, which is the proposed type genome of this species has an incomplete 16S rRNA genome. We have not been able to assemble a better 16S rRNA gene sequence for this species, including the three other genomes we have for the species (see linked publication for details).
Automated checks
Complete
See additional details
Last modified about 1 year ago

Metadata

Outside links and data sources
Search sequences
Local history
Registered
Almost 3 years ago by Thomas, Torsten
Submitted
Over 2 years ago by Thomas, Torsten
Curators
Endorsed
Over 2 years ago by Palmer, Marike
Validated
Over 2 years ago by Palmer, Marike
Date of priority
2023-08-25 02:22 PM (UTC)

Publications
1

Citation Title
Nguyen et al., 2023, Systematic and Applied Microbiology Identification, classification, and functional characterization of novel sponge-associated acidimicrobiial species
Effective publication


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seqco.de/r:v1sky3wb