Aldehydirespirator catecholifindens^Ts

Citation

Formal styling

Aldehydirespirator catecholifindens^Ts Nguyen et al., 2023

Effective publication

Nguyen et al., 2023

SeqCode status

Valid (SeqCode)

Register List

seqco.de/r:v1sky3wb (validated)

Canonical URL

https://seqco.de/i:24017

Nomenclature

Rank

Species

Syllabication

ca.te.cho.li.fin'dens

Etymology

N.L. neut. n. catecholum, catechol; L. v. findo, to split; N.L. masc. part. adj. catecholifindens, one with the ability to split catechols

Nomenclatural type

NCBI Assembly: GCA_028283245.1

Nomenclatural status

Validly published under the SeqCode

Taxonomy

Description

Sponge-derived acidimicrobiial species with the predicted capability to degrade catechol. Its electron transport chain may also rely on acetaldehyde reduction for menaquinol/menaquinone cycling 

Classification

Bacteria » Actinomycetota » Acidimicrobiia » Acidimicrobiales » Aldehydirespiratoraceae » Aldehydirespirator » Aldehydirespirator catecholifindens^Ts

Parent

Aldehydirespirator gtdb

Genomics

Accession

NCBI Assembly:GCA_028283245.1

Type

Metagenome-Assembled Genome (MAG)

Estimated Quality Metrics

• Completeness: 92.31%
• Contamination: 0.85%
• Quality: 88.06

Ribosomal and transfer RNA genes

• 1 16S rRNA (up to 80.0%)
• 0 23S rRNAs
• tRNAs for 20 amino acids

Sequencing depth

15.0 ×

Source

• BioSample: SAMN31047463
• And 3 more…

Other features

• G+C Content: 57.59%
• Coding Density: 91.84%
• Codon Table: 11
• N50: 36,208 bp
• Contigs: 104
• Largest Contig: 124,589 bp
• Assembly Length: 2,593,093 bp
• Ambiguous Assembly Fraction: 0.0016%

Submitter comments

Completeness and contamination were assessed with CheckM v1.1.0 using a lineage-specific workflow.

JAPYNU000000000, which is the proposed type genome of this species has an incomplete 16S rRNA genome. We have not been able to assemble a better 16S rRNA gene sequence for this species, including the three other genomes we have for the species (see linked publication for details).

Automated checks

Complete

See additional details

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Last modified 8 days ago

Metadata

Outside links and data sources

• GTDB Genome: GCA_028283245.1
• GTDB Tree: s__Aldehydirespirator catecholifindens
• Global Biodiversity Information Facility (GBIF)
• Wikispecies: Aldehydirespirator catecholifindens (see reference source)

Search sequences

• Seach in NCBI Nucleotide

Local history

• This name was last modified about 1 year ago
• Submission process status
• Quality checks before valid publication

Registered by

Thomas, Torsten almost 2 years ago

Submitted by

Thomas, Torsten about 1 year ago

Curators

• Rodriguez-R, Luis M
• Palmer, Marike

Endorsed by

Palmer, Marike about 1 year ago

Validated by

Palmer, Marike about 1 year ago

Date of priority

2023-08-25 02:22 PM (UTC)