Keywords: GSC:MIxS;MIMAG:5.0

BioSample Accession(s)

SAMN31047477

collection_date

2014-06

number_of_host_metagenomes

3

organism

Candidatus Poriferisodalis multihospitum

env_broad_scale

coral reef [ENVO:00000150]

metagenomic

1

environmental-sample

1

env_local_scale

coral reef [ENVO:00000150]

metagenome-source

sponge metagenome

isolate

m_rhlh10

NCBI submission package

MIMAG.host-associated.5.0

experimental_conditions

low temperature high CO2

host

Rhopaloeides odorabile

geo_loc_name

Australia:Davies Reef

env_medium

sponge

lat_lon

18.816 S 147.633 E

isolation_source

sponge microbiome

sample-type

metagenomic assembly

BioSampleModel

MIMAG.host-associated

ENA-FIRST-PUBLIC

2022-10-01

ENA-LAST-UPDATE

2022-12-13

BioSample Accession(s)

SAMN13227219, SRS5616661

collection_date

2014-06

INSDC secondary accession

SRS5616661

NCBI submission package

Metagenome.environmental.1.0

Treatment

31.5_1200_rep3

organism

sponge metagenome

isolation-source

sponge tissue

host

Rhopaloeides odorabile

geo_loc_name

Australia: Davies Reef, Great Barrier Reef

samp_mat_process

microbes separated from host by filtration and centrifugation

lat_lon

18.816 S 147.633 E

BioSampleModel

Metagenome or environmental

ENA-FIRST-PUBLIC

2019-11-06

ENA-LAST-UPDATE

2022-12-22

BioSample Accession(s)

SAMN13227218, SRS5616660

collection_date

2014-06

INSDC secondary accession

SRS5616660

NCBI submission package

Metagenome.environmental.1.0

Treatment

31.5_1200_rep2

organism

sponge metagenome

isolation-source

sponge tissue

host

Rhopaloeides odorabile

geo_loc_name

Australia: Davies Reef, Great Barrier Reef

samp_mat_process

microbes separated from host by filtration and centrifugation

lat_lon

18.816 S 147.633 E

BioSampleModel

Metagenome or environmental

ENA-FIRST-PUBLIC

2019-11-06

ENA-LAST-UPDATE

2022-12-22

BioSample Accession(s)

SAMN13227217, SRS5616659

collection_date

2014-06

INSDC secondary accession

SRS5616659

NCBI submission package

Metagenome.environmental.1.0

Treatment

31.5_1200_rep1

organism

sponge metagenome

isolation-source

sponge tissue

host

Rhopaloeides odorabile

geo_loc_name

Australia: Davies Reef, Great Barrier Reef

samp_mat_process

microbes separated from host by filtration and centrifugation

lat_lon

18.816 S 147.633 E

BioSampleModel

Metagenome or environmental

ENA-FIRST-PUBLIC

2019-11-06

ENA-LAST-UPDATE

2022-12-22

Metadata as EBI XML

<EXPERIMENT_SET>
<EXPERIMENT accession="SRX7105469" alias="R12" center_name="SUB6516238" broker_name="NCBI">
  <IDENTIFIERS>
    <PRIMARY_ID>SRX7105469</PRIMARY_ID>
    <SUBMITTER_ID namespace="SUB6516238">R12</SUBMITTER_ID>
  </IDENTIFIERS>
  <TITLE>Metagenomes of microbes from Rhopaloeides odorabile</TITLE>
  <STUDY_REF accession="SRP228733">
    <IDENTIFIERS>
      <PRIMARY_ID>SRP228733</PRIMARY_ID>
      <SUBMITTER_ID namespace="SUB6516238">bp0</SUBMITTER_ID>
    </IDENTIFIERS>
  </STUDY_REF>
  <DESIGN>
    <DESIGN_DESCRIPTION>DNA extracted on microbes separated from host by filtration and centrifugation</DESIGN_DESCRIPTION>
    <SAMPLE_DESCRIPTOR accession="SRS5616659">
      <IDENTIFIERS>
        <PRIMARY_ID>SRS5616659</PRIMARY_ID>
        <SUBMITTER_ID namespace="pda|hluter">Rhopaloeides_12</SUBMITTER_ID>
      </IDENTIFIERS>
    </SAMPLE_DESCRIPTOR>
    <LIBRARY_DESCRIPTOR>
      <LIBRARY_NAME>R12</LIBRARY_NAME>
      <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
      <LIBRARY_SOURCE>METAGENOMIC</LIBRARY_SOURCE>
      <LIBRARY_SELECTION>unspecified</LIBRARY_SELECTION>
      <LIBRARY_LAYOUT>
        <PAIRED/>
      </LIBRARY_LAYOUT>
    </LIBRARY_DESCRIPTOR>
  </DESIGN>
  <PLATFORM>
    <ILLUMINA>
      <INSTRUMENT_MODEL>Illumina MiSeq</INSTRUMENT_MODEL>
    </ILLUMINA>
  </PLATFORM>
  <EXPERIMENT_LINKS>
    <EXPERIMENT_LINK>
      <XREF_LINK>
        <DB>ENA-SAMPLE</DB>
        <ID>SRS5616659</ID>
      </XREF_LINK>
    </EXPERIMENT_LINK>
    <EXPERIMENT_LINK>
      <XREF_LINK>
        <DB>ENA-SUBMISSION</DB>
        <ID>SRA992141</ID>
      </XREF_LINK>
    </EXPERIMENT_LINK>
    <EXPERIMENT_LINK>
      <XREF_LINK>
        <DB>ENA-FASTQ-FILES</DB>
        <ID><![CDATA[https://www.ebi.ac.uk/ena/portal/api/filereport?accession=SRX7105469&result=read_run&fields=run_accession,fastq_ftp,fastq_md5,fastq_bytes]]></ID>
      </XREF_LINK>
    </EXPERIMENT_LINK>
    <EXPERIMENT_LINK>
      <XREF_LINK>
        <DB>ENA-SUBMITTED-FILES</DB>
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      </XREF_LINK>
    </EXPERIMENT_LINK>
  </EXPERIMENT_LINKS>
  <EXPERIMENT_ATTRIBUTES>
    <EXPERIMENT_ATTRIBUTE>
      <TAG>ENA-STATUS-ID</TAG>
      <VALUE>4</VALUE>
    </EXPERIMENT_ATTRIBUTE>
  </EXPERIMENT_ATTRIBUTES>
</EXPERIMENT>
</EXPERIMENT_SET>

Metadata as EBI XML

<EXPERIMENT_SET>
<EXPERIMENT accession="SRX7105470" alias="R11" center_name="SUB6516238" broker_name="NCBI">
  <IDENTIFIERS>
    <PRIMARY_ID>SRX7105470</PRIMARY_ID>
    <SUBMITTER_ID namespace="SUB6516238">R11</SUBMITTER_ID>
  </IDENTIFIERS>
  <TITLE>Metagenomes of microbes from Rhopaloeides odorabile</TITLE>
  <STUDY_REF accession="SRP228733">
    <IDENTIFIERS>
      <PRIMARY_ID>SRP228733</PRIMARY_ID>
      <SUBMITTER_ID namespace="SUB6516238">bp0</SUBMITTER_ID>
    </IDENTIFIERS>
  </STUDY_REF>
  <DESIGN>
    <DESIGN_DESCRIPTION>DNA extracted on microbes separated from host by filtration and centrifugation</DESIGN_DESCRIPTION>
    <SAMPLE_DESCRIPTOR accession="SRS5616660">
      <IDENTIFIERS>
        <PRIMARY_ID>SRS5616660</PRIMARY_ID>
        <SUBMITTER_ID namespace="pda|hluter">Rhopaloeides_11</SUBMITTER_ID>
      </IDENTIFIERS>
    </SAMPLE_DESCRIPTOR>
    <LIBRARY_DESCRIPTOR>
      <LIBRARY_NAME>R11</LIBRARY_NAME>
      <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
      <LIBRARY_SOURCE>METAGENOMIC</LIBRARY_SOURCE>
      <LIBRARY_SELECTION>unspecified</LIBRARY_SELECTION>
      <LIBRARY_LAYOUT>
        <PAIRED/>
      </LIBRARY_LAYOUT>
    </LIBRARY_DESCRIPTOR>
  </DESIGN>
  <PLATFORM>
    <ILLUMINA>
      <INSTRUMENT_MODEL>Illumina MiSeq</INSTRUMENT_MODEL>
    </ILLUMINA>
  </PLATFORM>
  <EXPERIMENT_LINKS>
    <EXPERIMENT_LINK>
      <XREF_LINK>
        <DB>ENA-SAMPLE</DB>
        <ID>SRS5616660</ID>
      </XREF_LINK>
    </EXPERIMENT_LINK>
    <EXPERIMENT_LINK>
      <XREF_LINK>
        <DB>ENA-SUBMISSION</DB>
        <ID>SRA992141</ID>
      </XREF_LINK>
    </EXPERIMENT_LINK>
    <EXPERIMENT_LINK>
      <XREF_LINK>
        <DB>ENA-FASTQ-FILES</DB>
        <ID><![CDATA[https://www.ebi.ac.uk/ena/portal/api/filereport?accession=SRX7105470&result=read_run&fields=run_accession,fastq_ftp,fastq_md5,fastq_bytes]]></ID>
      </XREF_LINK>
    </EXPERIMENT_LINK>
    <EXPERIMENT_LINK>
      <XREF_LINK>
        <DB>ENA-SUBMITTED-FILES</DB>
        <ID><![CDATA[https://www.ebi.ac.uk/ena/portal/api/filereport?accession=SRX7105470&result=read_run&fields=run_accession,submitted_ftp,submitted_md5,submitted_bytes,submitted_format]]></ID>
      </XREF_LINK>
    </EXPERIMENT_LINK>
  </EXPERIMENT_LINKS>
  <EXPERIMENT_ATTRIBUTES>
    <EXPERIMENT_ATTRIBUTE>
      <TAG>ENA-STATUS-ID</TAG>
      <VALUE>4</VALUE>
    </EXPERIMENT_ATTRIBUTE>
  </EXPERIMENT_ATTRIBUTES>
</EXPERIMENT>
</EXPERIMENT_SET>

Metadata as EBI XML

<EXPERIMENT_SET>
<EXPERIMENT accession="SRX7105471" alias="R10" center_name="SUB6516238" broker_name="NCBI">
  <IDENTIFIERS>
    <PRIMARY_ID>SRX7105471</PRIMARY_ID>
    <SUBMITTER_ID namespace="SUB6516238">R10</SUBMITTER_ID>
  </IDENTIFIERS>
  <TITLE>Metagenomes of microbes from Rhopaloeides odorabile</TITLE>
  <STUDY_REF accession="SRP228733">
    <IDENTIFIERS>
      <PRIMARY_ID>SRP228733</PRIMARY_ID>
      <SUBMITTER_ID namespace="SUB6516238">bp0</SUBMITTER_ID>
    </IDENTIFIERS>
  </STUDY_REF>
  <DESIGN>
    <DESIGN_DESCRIPTION>DNA extracted on microbes separated from host by filtration and centrifugation</DESIGN_DESCRIPTION>
    <SAMPLE_DESCRIPTOR accession="SRS5616661">
      <IDENTIFIERS>
        <PRIMARY_ID>SRS5616661</PRIMARY_ID>
        <SUBMITTER_ID namespace="pda|hluter">Rhopaloeides_10</SUBMITTER_ID>
      </IDENTIFIERS>
    </SAMPLE_DESCRIPTOR>
    <LIBRARY_DESCRIPTOR>
      <LIBRARY_NAME>R10</LIBRARY_NAME>
      <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
      <LIBRARY_SOURCE>METAGENOMIC</LIBRARY_SOURCE>
      <LIBRARY_SELECTION>unspecified</LIBRARY_SELECTION>
      <LIBRARY_LAYOUT>
        <PAIRED/>
      </LIBRARY_LAYOUT>
    </LIBRARY_DESCRIPTOR>
  </DESIGN>
  <PLATFORM>
    <ILLUMINA>
      <INSTRUMENT_MODEL>Illumina MiSeq</INSTRUMENT_MODEL>
    </ILLUMINA>
  </PLATFORM>
  <EXPERIMENT_LINKS>
    <EXPERIMENT_LINK>
      <XREF_LINK>
        <DB>ENA-SAMPLE</DB>
        <ID>SRS5616661</ID>
      </XREF_LINK>
    </EXPERIMENT_LINK>
    <EXPERIMENT_LINK>
      <XREF_LINK>
        <DB>ENA-SUBMISSION</DB>
        <ID>SRA992141</ID>
      </XREF_LINK>
    </EXPERIMENT_LINK>
    <EXPERIMENT_LINK>
      <XREF_LINK>
        <DB>ENA-FASTQ-FILES</DB>
        <ID><![CDATA[https://www.ebi.ac.uk/ena/portal/api/filereport?accession=SRX7105471&result=read_run&fields=run_accession,fastq_ftp,fastq_md5,fastq_bytes]]></ID>
      </XREF_LINK>
    </EXPERIMENT_LINK>
    <EXPERIMENT_LINK>
      <XREF_LINK>
        <DB>ENA-SUBMITTED-FILES</DB>
        <ID><![CDATA[https://www.ebi.ac.uk/ena/portal/api/filereport?accession=SRX7105471&result=read_run&fields=run_accession,submitted_ftp,submitted_md5,submitted_bytes,submitted_format]]></ID>
      </XREF_LINK>
    </EXPERIMENT_LINK>
  </EXPERIMENT_LINKS>
  <EXPERIMENT_ATTRIBUTES>
    <EXPERIMENT_ATTRIBUTE>
      <TAG>ENA-STATUS-ID</TAG>
      <VALUE>4</VALUE>
    </EXPERIMENT_ATTRIBUTE>
  </EXPERIMENT_ATTRIBUTES>
</EXPERIMENT>
</EXPERIMENT_SET>