Genome sc|0000338

Genomics

Accession

NCBI Assembly:GCA_028278755.1

Type

Metagenome-Assembled Genome (MAG)

Estimated Quality Metrics

• Completeness: 91.88%
• Contamination: 1.71%
• Quality: 83.33

Ribosomal and transfer RNA genes

• 2 16S rRNAs (up to 80.0%)
• 1 23S rRNA (up to 67.0%)
• tRNAs for 20 amino acids

Sequencing depth

10.0 ×

Source

• BioSample: SAMN31047477

Other features

• G+C Content: 67.2%
• Coding Density: 92.15%
• Codon Table: 11
• N50: 12,288 bp
• Contigs: 360
• Largest Contig: 79,380 bp
• Assembly Length: 3,142,008 bp
• Ambiguous Assembly Fraction: 0.0%

Submitter comments

Completeness and contamination were assessed with CheckM v1.1.0 using a lineage-specific workflow.

We have not be able to reconstruct a better 16S rRNA gene sequence, but phylogenetic placement of the 16S rRNA gene is robust (see Nguyen et al., 2023).

Automated checks

Complete

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Last modified about 1 month ago

Sample Metadata

BioSample entries

• BioSample: SAMN31047477

Date

Collection Date: 2014-06

Location

Lat Lon: 18.816 S 147.633 E

Toponym

Geo Loc Name: Australia:Davies Reef

Environment

Sample Type: metagenomic assembly

Isolation Source: sponge microbiome

Env Broad Scale: coral reef [ENVO:00000150]

Env Local Scale: coral reef [ENVO:00000150]

Env Medium: sponge

Other

Host: Rhopaloeides odorabile

Package

Ncbi Submission Package: MIMAG.host-associated.5.0

Biosamplemodel: MIMAG.host-associated

All retrieved samples

• SAMN31047477: MIMAG Metagenome-assembled Genome sample from Candidatus Poriferisodalis multihospitum

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Metadata retrieved about 1 month ago