Genome sc|0000338


Database

NCBI Assembly

Accession

GCA_028278755.1

Genomics

Accession
NCBI Assembly:GCA_028278755.1
Type
Metagenome-Assembled Genome (MAG)
Estimated Quality Metrics
  • Completeness: 91.88%
  • Contamination: 1.71%
  • Quality: 83.33
Ribosomal and transfer RNA genes
  • 2 16S rRNAs (up to 80.0%)
  • 1 23S rRNA (up to 67.0%)
  • tRNAs for 20 amino acids
Sequencing depth
10.0 ×
Source
Other features
  • G+C Content: 67.2%
  • Coding Density: 92.15%
  • Codon Table: 11
  • N50: 12,288 bp
  • Contigs: 360
  • Largest Contig: 79,380 bp
  • Assembly Length: 3,142,008 bp
  • Ambiguous Assembly Fraction: 0.0%
Submitter comments
Completeness and contamination were assessed with CheckM v1.1.0 using a lineage-specific workflow.

We have not be able to reconstruct a better 16S rRNA gene sequence, but phylogenetic placement of the 16S rRNA gene is robust (see Nguyen et al., 2023).
Automated checks
Complete

Sample Metadata

Date
Collection Date: 2014-06
Location
Lat Lon: 18.816 S 147.633 E
Toponym
Geo Loc Name: Australia:Davies Reef
Environment
Sample Type: metagenomic assembly
Isolation Source: sponge microbiome
Env Broad Scale: coral reef [ENVO:00000150]
Env Local Scale: coral reef [ENVO:00000150]
Env Medium: sponge
Other
Host: Rhopaloeides odorabile
Package
Ncbi Submission Package: MIMAG.host-associated.5.0
Biosamplemodel: MIMAG.host-associated
All retrieved samples

Metadata retrieved 5 months ago


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