JSON

Genome sc|0000338

Name

Poriferisodalis multihospitumTs

Database

NCBI Assembly

Accession

GCA_028278755.1

Genomics

Accession
NCBI Assembly:GCA_028278755.1
Type
Metagenome-Assembled Genome (MAG)
Estimated Quality Metrics
  • Completeness: 91.88%
  • Contamination: 1.71%
  • Quality: 83.33
Ribosomal and transfer RNA genes
  • 2 16S rRNAs (up to 80.0%)
  • 1 23S rRNA (up to 67.0%)
  • tRNAs for 20 amino acids
Sequencing depth
10.0 ×
Source
Other features
  • G+C Content: 67.2%
  • Coding Density: 92.15%
  • Codon Table: 11
  • N50: 12,288 bp
  • Contigs: 360
  • Largest Contig: 79,380 bp
  • Assembly Length: 3,142,008 bp
  • Ambiguous Assembly Fraction: 0.0%
Submitter comments
Completeness and contamination were assessed with CheckM v1.1.0 using a lineage-specific workflow.

We have not be able to reconstruct a better 16S rRNA gene sequence, but phylogenetic placement of the 16S rRNA gene is robust (see Nguyen et al., 2023).
Automated checks
Complete
Last modified 10 months ago

Sample Metadata

BioSample entries
Date
Collection Date: 2014-06
Location
Lat Lon: 18° 48′ 58″ S, 147° 37′ 59″ E
View map of sampling locations
Toponym
Geo Loc Name: Australia:Davies Reef • Australia: Davies Reef, Great Barrier Reef
Environment
Sample Type: metagenomic assembly
Isolation Source: sponge microbiome • sponge tissue
Env Broad Scale: coral reef [ENVO:00000150]
Env Local Scale: coral reef [ENVO:00000150]
Env Medium: sponge
Other
Host: Rhopaloeides odorabile
Package
Biosamplemodel: MIMAG.host-associated • Metagenome or environmental
All retrieved samples
Metadata retrieved 10 months ago


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