Poriferisodalis multihospitumTs


Citation

Formal styling
Poriferisodalis multihospitumTs Nguyen et al., 2023
Effective publication
Nguyen et al., 2023
SeqCode status
Valid (SeqCode)
Register List
seqco.de/r:v1sky3wb (validated)
Cannonical URL
https://seqco.de/i:23660

Nomenclature

Rank
Species
Syllabication
mul.ti.hos.pi'tum
Etymology
L. masc. adj. multus, numerous; L. masc. n. hospes, a host; N.L. masc. adj. multihospitum, one who lives with multiple hosts
Nomenclatural type
NCBI Assembly: GCA_028278755.1
Nomenclatural status
Validly published under the SeqCode

Taxonomy

Description
Sponge symbiont found in many sponges species and predict to be a facultatively aerobic chemoorganoheterotroph and capable of assimilating nitrogen, sulfur, and carbon from diverse sources.
Classification
Bacteria » Actinomycetota » Acidimicrobiia » Acidimicrobiales » Poriferisodalaceae » Poriferisodalis » Poriferisodalis multihospitumTs
Parent
Poriferisodalis gtdb

Genomics

Accession
NCBI Assembly:GCA_028278755.1
Type
Metagenome-Assembled Genome (MAG)
Estimated Quality Metrics
  • Completeness: 91.88%
  • Contamination: 1.71%
  • Quality: 83.33
Ribosomal and transfer RNA genes
  • 2 16S rRNAs (up to 80.0%)
  • 1 23S rRNA (up to 67.0%)
  • tRNAs for 20 amino acids
Sequencing depth
10.0 ×
Source
Other features
  • G+C Content: 67.2%
  • Coding Density: 92.15%
  • Codon Table: 11
  • N50: 12,288 bp
  • Contigs: 360
  • Largest Contig: 79,380 bp
  • Assembly Length: 3,142,008 bp
  • Ambiguous Assembly Fraction: 0.0%
Submitter comments
Completeness and contamination were assessed with CheckM v1.1.0 using a lineage-specific workflow.

We have not be able to reconstruct a better 16S rRNA gene sequence, but phylogenetic placement of the 16S rRNA gene is robust (see Nguyen et al., 2023).
Automated checks
Complete
See additional details

Metadata

Outside links and data sources
Search sequences
Local history
Registered by
Thomas, Torsten over 1 year ago
Submitted by
Thomas, Torsten 9 months ago
Curators
Endorsed by
Palmer, Marike 9 months ago
Validated by
Palmer, Marike 9 months ago

Publications
1

Citation Title
Nguyen et al., 2023, Systematic and Applied Microbiology Identification, classification, and functional characterization of novel sponge-associated acidimicrobiial species
Effective publication



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