BioSample Accession(s)

SAMN20170173, SRS9467138

collection_date

2019

INSDC secondary accession

SRS9467138

NCBI submission package

Metagenome.environmental.1.0

organism

freshwater metagenome

geo_loc_name

Spain: Lagunillo de Cardenillas, Cuenca

lat_lon

39.979814 N 1.863846 W

isolation_source

freshwater biome - 3 m - C3

BioSampleModel

Metagenome or environmental

ENA-FIRST-PUBLIC

2021-12-31

ENA-LAST-UPDATE

2021-12-31

BioSample Accession(s)

SAMN20170171, SRS9467136

collection_date

2019

INSDC secondary accession

SRS9467136

NCBI submission package

Metagenome.environmental.1.0

organism

freshwater metagenome

geo_loc_name

Spain: Lagunillo de Cardenillas, Cuenca

lat_lon

39.979814 N 1.863846 W

isolation_source

freshwater biome - 0.5 m - N5

BioSampleModel

Metagenome or environmental

ENA-FIRST-PUBLIC

2021-12-31

ENA-LAST-UPDATE

2021-12-31

Metadata as EBI XML

<RUN_SET>
<RUN accession="SRR15116520" alias="N5_Cardenillas-sup-R1.fastq.gz" center_name="SUB9993561" broker_name="NCBI">
  <IDENTIFIERS>
    <PRIMARY_ID>SRR15116520</PRIMARY_ID>
    <SUBMITTER_ID label="0" namespace="SUB9993561">N5_Cardenillas-sup-R1.fastq.gz</SUBMITTER_ID>
  </IDENTIFIERS>
  <TITLE>Illumina NovaSeq 6000 paired end sequencing; Lagunillo Cardenillas N5 sup - 0.22 micron metagenome</TITLE>
  <EXPERIMENT_REF accession="SRX11425337">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX11425337</PRIMARY_ID>
      <SUBMITTER_ID namespace="SUB9993561">Cardenillas-N5-sup</SUBMITTER_ID>
    </IDENTIFIERS>
  </EXPERIMENT_REF>
  <RUN_LINKS>
    <RUN_LINK>
      <XREF_LINK>
        <DB>ENA-SUBMISSION</DB>
        <ID>SRA1258599</ID>
      </XREF_LINK>
    </RUN_LINK>
    <RUN_LINK>
      <XREF_LINK>
        <DB>ENA-STUDY</DB>
        <ID>SRP328153</ID>
      </XREF_LINK>
    </RUN_LINK>
    <RUN_LINK>
      <XREF_LINK>
        <DB>ENA-SAMPLE</DB>
        <ID>SRS9467136</ID>
      </XREF_LINK>
    </RUN_LINK>
    <RUN_LINK>
      <XREF_LINK>
        <DB>ENA-FASTQ-FILES</DB>
        <ID><![CDATA[https://www.ebi.ac.uk/ena/portal/api/filereport?accession=SRR15116520&result=read_run&fields=run_accession,fastq_ftp,fastq_md5,fastq_bytes]]></ID>
      </XREF_LINK>
    </RUN_LINK>
    <RUN_LINK>
      <XREF_LINK>
        <DB>ENA-SUBMITTED-FILES</DB>
        <ID><![CDATA[https://www.ebi.ac.uk/ena/portal/api/filereport?accession=SRR15116520&result=read_run&fields=run_accession,submitted_ftp,submitted_md5,submitted_bytes,submitted_format]]></ID>
      </XREF_LINK>
    </RUN_LINK>
  </RUN_LINKS>
  <RUN_ATTRIBUTES>
    <RUN_ATTRIBUTE>
      <TAG>ENA-FIRST-PUBLIC</TAG>
      <VALUE>2022-01-01</VALUE>
    </RUN_ATTRIBUTE>
    <RUN_ATTRIBUTE>
      <TAG>ENA-LAST-UPDATE</TAG>
      <VALUE>2022-01-01</VALUE>
    </RUN_ATTRIBUTE>
  </RUN_ATTRIBUTES>
</RUN>
</RUN_SET>

Metadata as EBI XML

<EXPERIMENT_SET>
<EXPERIMENT accession="SRX11425339" alias="Cardenillas-C3-3m" center_name="SUB9993561" broker_name="NCBI">
  <IDENTIFIERS>
    <PRIMARY_ID>SRX11425339</PRIMARY_ID>
    <SUBMITTER_ID namespace="SUB9993561">Cardenillas-C3-3m</SUBMITTER_ID>
  </IDENTIFIERS>
  <TITLE>Lagunillo Cardenillas C3 3m - 0.22 micron metagenome</TITLE>
  <STUDY_REF accession="SRP328153">
    <IDENTIFIERS>
      <PRIMARY_ID>SRP328153</PRIMARY_ID>
      <EXTERNAL_ID namespace="BioProject">PRJNA745587</EXTERNAL_ID>
    </IDENTIFIERS>
  </STUDY_REF>
  <DESIGN>
    <DESIGN_DESCRIPTION>-</DESIGN_DESCRIPTION>
    <SAMPLE_DESCRIPTOR accession="SRS9467138">
      <IDENTIFIERS>
        <PRIMARY_ID>SRS9467138</PRIMARY_ID>
        <EXTERNAL_ID namespace="BioSample">SAMN20170173</EXTERNAL_ID>
      </IDENTIFIERS>
    </SAMPLE_DESCRIPTOR>
    <LIBRARY_DESCRIPTOR>
      <LIBRARY_NAME>Cardenillas-C3-3m</LIBRARY_NAME>
      <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
      <LIBRARY_SOURCE>METAGENOMIC</LIBRARY_SOURCE>
      <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
      <LIBRARY_LAYOUT>
        <PAIRED/>
      </LIBRARY_LAYOUT>
    </LIBRARY_DESCRIPTOR>
  </DESIGN>
  <PLATFORM>
    <ILLUMINA>
      <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL>
    </ILLUMINA>
  </PLATFORM>
  <EXPERIMENT_LINKS>
    <EXPERIMENT_LINK>
      <XREF_LINK>
        <DB>ENA-SAMPLE</DB>
        <ID>SRS9467138</ID>
      </XREF_LINK>
    </EXPERIMENT_LINK>
    <EXPERIMENT_LINK>
      <XREF_LINK>
        <DB>ENA-SUBMISSION</DB>
        <ID>SRA1258599</ID>
      </XREF_LINK>
    </EXPERIMENT_LINK>
    <EXPERIMENT_LINK>
      <XREF_LINK>
        <DB>ENA-FASTQ-FILES</DB>
        <ID><![CDATA[https://www.ebi.ac.uk/ena/portal/api/filereport?accession=SRX11425339&result=read_run&fields=run_accession,fastq_ftp,fastq_md5,fastq_bytes]]></ID>
      </XREF_LINK>
    </EXPERIMENT_LINK>
    <EXPERIMENT_LINK>
      <XREF_LINK>
        <DB>ENA-SUBMITTED-FILES</DB>
        <ID><![CDATA[https://www.ebi.ac.uk/ena/portal/api/filereport?accession=SRX11425339&result=read_run&fields=run_accession,submitted_ftp,submitted_md5,submitted_bytes,submitted_format]]></ID>
      </XREF_LINK>
    </EXPERIMENT_LINK>
  </EXPERIMENT_LINKS>
</EXPERIMENT>
</EXPERIMENT_SET>

Metadata as EBI XML

<EXPERIMENT_SET>
<EXPERIMENT accession="SRX11425337" alias="Cardenillas-N5-sup" center_name="SUB9993561" broker_name="NCBI">
  <IDENTIFIERS>
    <PRIMARY_ID>SRX11425337</PRIMARY_ID>
    <SUBMITTER_ID namespace="SUB9993561">Cardenillas-N5-sup</SUBMITTER_ID>
  </IDENTIFIERS>
  <TITLE>Lagunillo Cardenillas N5 sup - 0.22 micron metagenome</TITLE>
  <STUDY_REF accession="SRP328153">
    <IDENTIFIERS>
      <PRIMARY_ID>SRP328153</PRIMARY_ID>
      <EXTERNAL_ID namespace="BioProject">PRJNA745587</EXTERNAL_ID>
    </IDENTIFIERS>
  </STUDY_REF>
  <DESIGN>
    <DESIGN_DESCRIPTION>-</DESIGN_DESCRIPTION>
    <SAMPLE_DESCRIPTOR accession="SRS9467136">
      <IDENTIFIERS>
        <PRIMARY_ID>SRS9467136</PRIMARY_ID>
        <EXTERNAL_ID namespace="BioSample">SAMN20170171</EXTERNAL_ID>
      </IDENTIFIERS>
    </SAMPLE_DESCRIPTOR>
    <LIBRARY_DESCRIPTOR>
      <LIBRARY_NAME>Cardenillas-N5-sup</LIBRARY_NAME>
      <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
      <LIBRARY_SOURCE>METAGENOMIC</LIBRARY_SOURCE>
      <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
      <LIBRARY_LAYOUT>
        <PAIRED/>
      </LIBRARY_LAYOUT>
    </LIBRARY_DESCRIPTOR>
  </DESIGN>
  <PLATFORM>
    <ILLUMINA>
      <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL>
    </ILLUMINA>
  </PLATFORM>
  <EXPERIMENT_LINKS>
    <EXPERIMENT_LINK>
      <XREF_LINK>
        <DB>ENA-SAMPLE</DB>
        <ID>SRS9467136</ID>
      </XREF_LINK>
    </EXPERIMENT_LINK>
    <EXPERIMENT_LINK>
      <XREF_LINK>
        <DB>ENA-SUBMISSION</DB>
        <ID>SRA1258599</ID>
      </XREF_LINK>
    </EXPERIMENT_LINK>
    <EXPERIMENT_LINK>
      <XREF_LINK>
        <DB>ENA-FASTQ-FILES</DB>
        <ID><![CDATA[https://www.ebi.ac.uk/ena/portal/api/filereport?accession=SRX11425337&result=read_run&fields=run_accession,fastq_ftp,fastq_md5,fastq_bytes]]></ID>
      </XREF_LINK>
    </EXPERIMENT_LINK>
    <EXPERIMENT_LINK>
      <XREF_LINK>
        <DB>ENA-SUBMITTED-FILES</DB>
        <ID><![CDATA[https://www.ebi.ac.uk/ena/portal/api/filereport?accession=SRX11425337&result=read_run&fields=run_accession,submitted_ftp,submitted_md5,submitted_bytes,submitted_format]]></ID>
      </XREF_LINK>
    </EXPERIMENT_LINK>
  </EXPERIMENT_LINKS>
</EXPERIMENT>
</EXPERIMENT_SET>