Thiocapsa roseilacustris


Citation

Formal styling
Thiocapsa roseilacustris Cabello‐Yeves et al., 2025
Effective publication
Cabello‐Yeves et al., 2025
SeqCode status
Valid (SeqCode)
Register List
seqco.de/r:yd1si0sa (validated)
Canonical URL
https://seqco.de/i:49664

Nomenclature

Rank
Species
Syllabication
ro.se.i.la.cus'tris
Etymology
L. masc. adj. roseus, rose-coloured; L. fem. adj. lacustris, of a lake, referring to the lacustrine origin and presence of the organism in different lakes; L. fem. adj. roseilacustris, of a rose lake
Nomenclatural type
NCBI Assembly: GCF_041903755.1
Nomenclatural status
Validly published under the SeqCode

Taxonomy

Description
The Thiocapsa genus was defined by Pfennig and Trüper (1971).

The isolation source of this species was the freshwater lake Lagunillo de Cardenillas (Cuenca, Spain). The type strain is Thiocapsa roseilacustris strain N5-Cardenillas. It is gram negative with cells of approximately 1.5 μm length and 0.8 μm width ± 0.2 μm. It possesses a mol% G + C content of 63.4%. The genome recovered as a MAG has 6,229,630 bp. MAGs representing composite clones within the same species are available at NCBI-GenBank (Biosample numbers SAMN40716411-SAMN40716415). Nomarsky, TEM and bright-field microscopy pictures are shown in the publication. This species and its associated microbiome are currently enriched and preserved at 4 ºC in bottles with the original lake water from 2m winter 2019 campaign and is available under request.

Classification
Bacteria » Pseudomonadota » Gammaproteobacteria » Chromatiales » Chromatiaceae » Thiocapsa » Thiocapsa roseilacustris
Parent
Thiocapsa

Genomics

Accession
NCBI Assembly:GCF_041903755.1
Type
Metagenome-Assembled Genome (MAG)
Estimated Quality Metrics
  • Completeness: 99.58%
  • Contamination: 0.33%
  • Quality: 97.93
Ribosomal and transfer RNA genes
  • 0 16S rRNAs
  • 1 23S rRNA (up to 100.0%)
  • tRNAs for 20 amino acids
Sequencing depth
200.0 ×
Source
Other features
  • G+C Content: 63.5%
  • Coding Density: 83.66%
  • Codon Table: 11
  • N50: 147,885 bp
  • Contigs: 96
  • Largest Contig: 259,907 bp
  • Assembly Length: 6,127,461 bp
  • Ambiguous Assembly Fraction: 0.0%
Automated checks
Complete

Last modified 9 months ago

Metadata

Outside links and data sources
Search sequences
Local history
Registered
11 months ago by Cabello-Yeves, Pedro J.
Submitted
9 months ago by Cabello-Yeves, Pedro J.
Curators
Endorsed
8 months ago by Palmer, Marike
Validated
3 months ago by Palmer, Marike
Date of priority
2025-07-01 10:30 AM (UTC)

Publications
1

Citation Title
Cabello‐Yeves et al., 2025, Limnology and Oceanography Ecogenomics and limnological dynamics of a new Thiocapsa species blooming in the whole water column of a karstic lake
Effective publication



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