JSON

Genome sc|0003527

Name

“Shinella sumterensis”

Database

NCBI Assembly

Accession

GCF_004514425.2

Genomics

Accession
NCBI Assembly:GCF_004514425.2
Cultures
Strain sc|0038891
Type
Isolate Genome
Estimated Quality Metrics
  • Completeness: 99.1%
  • Contamination: 1.9%
  • Quality: 89.6
Ribosomal and transfer RNA genes
  • 1 16S rRNA (up to 100.0%)
  • 1 23S rRNA (up to 100.0%)
  • tRNAs for 20 amino acids
Sequencing depth
237.0 ×
Source
Other features
  • G+C Content: 63.4%
  • Coding Density: 89.42%
  • Codon Table: 11
  • N50: 259,640 bp
  • Contigs: 57
  • Largest Contig: 808,514 bp
  • Assembly Length: 5,373,392 bp
  • Ambiguous Assembly Fraction: 0.0%
Automated checks
Complete
Last modified 8 days ago

Sample Metadata

BioSample entries
Date
Collection Date: 2010
Location
Not detected
Toponym
Geo Loc Name: USA: Nantahala National Forest, NC
Environment
Sample Type: mixed culture
Isolation Source: campfire topsoil
Other
Not detected
Package
Ncbi Submission Package: Microbe.1.0
Biosamplemodel: Microbe, viral or environmental
All retrieved samples
Metadata retrieved 8 days ago


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