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Shinella sumterensis

Citation

Formal styling
Shinella sumterensis Arya et al., 2022 (priority 2025)
Effective publication
Arya et al., 2022
SeqCode status
Valid (SeqCode)
Register List
seqco.de/r:aofjwvm1 (validated)
Canonical URL
https://seqco.de/i:49625

Nomenclature

Rank
Species
Syllabication
sum.ter.en'sis
Etymology
N.L. fem. adj. sumterensis, in recognition of Sumter National Forest, South Carolina, United States, the location from which the type strain was isolated
Nomenclatural type
NCBI Assembly: GCF_004514425.2
Reference strain
Strain sc|0039550: MEC087 = DSM 27294 = ATCC TSD-106 Lookup StrainInfo
Nomenclatural status
Validly published under the SeqCode

Taxonomy

Description
Cells are Gram-negative staining cocci arranged in long chains, facultatively anaerobic, motile, catalase and oxidase positive. Colonies are small, pinkish-white, glistening, smooth, with entire margins after growth for 24 h on levoglucosan isolation medium at 37°C. Growth was observed on arabinose, cellobiosan, fructose, galactose, glucose, myo-inositol, lactose, levoglucosan, mannitol, mannose, sorbitol, sucrose, and xylose. The DNA G+C content is 63.4 mol%. The type strain (MEC087T = DSM 27294T = ATCC TSD-106) was isolated from silty topsoil heavy in organic matter from a campfire pit (Russell Homestead, SC; GPS location 34.91107, −83.17371). The accession number for the genome assembly is MYFN00000000, and the 16S rRNA sequence is locus tag B5M41_026195.
Classification
Bacteria » Pseudomonadota » Alphaproteobacteria » Hyphomicrobiales » Rhizobiaceae » Shinella » Shinella sumterensis
Parent
Shinella ncbigtdb

Genomics

Accession
NCBI Assembly:GCF_004514425.2
Cultures
Strain sc|0039550
Type
Isolate Genome
Estimated Quality Metrics
  • Completeness: 99.1%
  • Contamination: 1.9%
  • Quality: 89.6
Ribosomal and transfer RNA genes
  • 1 16S rRNA (up to 100.0%)
  • 1 23S rRNA (up to 100.0%)
  • tRNAs for 20 amino acids
Sequencing depth
237.0 ×
Source
Other features
  • G+C Content: 63.4%
  • Coding Density: 89.42%
  • Codon Table: 11
  • N50: 259,640 bp
  • Contigs: 57
  • Largest Contig: 808,514 bp
  • Assembly Length: 5,373,392 bp
  • Ambiguous Assembly Fraction: 0.0%
Automated checks
Complete
See additional details
Last modified 6 months ago

Metadata

Outside links and data sources
Search sequences
Local history
Registered
12 months ago and claimed 9 months ago by Van Lill, Melandre
Submitted
9 months ago by Van Lill, Melandre
Curators
Validated
6 months ago by Rodriguez-R, Luis M
Date of priority
2025-03-20 07:35 PM (UTC)

Publications
1

Citation Title
Arya et al., 2022, Applied and Environmental Microbiology Isolation and Characterization of Levoglucosan-Metabolizing Bacteria
Effective publication


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