Genome sc|0003539

Genomics

Accession

NCBI Assembly:GCA_022321325.1

Type

Metagenome-Assembled Genome (MAG)

Estimated Quality Metrics

• Completeness: 91.52%
• Contamination: 0.0%
• Quality: 91.52

Ribosomal and transfer RNA genes

• 0 16S rRNAs
• 0 23S rRNAs
• tRNAs for 19 amino acids

Sequencing depth

177.7 ×

Source

• BioSample: SAMN25538131
• BioSample: SAMN25638660

Other features

• G+C Content: 47.5%
• Coding Density: 91.13%
• Codon Table: 11
• N50: 44,214 bp
• Contigs: 142
• Largest Contig: 137,133 bp
• Assembly Length: 3,471,208 bp
• Ambiguous Assembly Fraction: 1.11%

Submitter comments

The quality metrics were assessed using the QUAST v5.0.2. The genome coverages were evaluated by QualiMap 2 v2.2.29 and Bowtie 2 v2.3.2. Genome completeness and contamination were estimated using CheckM v1.1.3 

Automated checks

Complete

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Last modified 5 days ago

Sample Metadata

BioSample entries

• BioSample: SAMN25538131
• BioSample: SAMN25638660

Date

Collection Date: 2016-10-13

Location

Lat Lon: 55° 37′ 48″ N, 39° 44′ 24″ E

View sampling location map

Toponym

Geo Loc Name: Russia: Moscow region, Shatura district, Lake Beloe Bordukovskoe

Environment

Sample Type: metagenomic assembly

Isolation Source: enrichment culture inoculated with freshwater sediment

Other

Not detected

Package

Ncbi Submission Package: Microbe.1.0 • Metagenome.environmental.1.0

Biosamplemodel: Microbe, viral or environmental • Metagenome or environmental

All retrieved samples

• SAMN25538131: Microbe sample from Candidatus Magnetominusculus sp. LBB02
• SAMN25638660: Metagenome or environmental sample from Enrichment magnetotactic bacteria from Beloe Bordukovskoe lake using MTB-CoSe

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Metadata retrieved 5 days ago