Allofontibacter universalis assembled from Lake Inawashiro, Japan

BioSample Accession(s)

SAMEA117871743, ERS23861696

ENA-CHECKLIST

ERC000047

assembly software

FLYE

binning software

MetaBAT, MetaBAT2, MaxBin

organism

Candidatus Pelagibacterales bacterium

broad-scale environmental context

freshwater biome

assembly quality

Multiple fragments where gaps span repetitive regions. Presence of the 23S, 16S, and 5S rRNA genes and at least 18 tRNAs

collection date

2022-09-25

sample derived from

ERS23657625

geographic location (longitude)

140.0988

taxonomic identity marker

multi-marker approach

binning parameters

coverage and kmer

completeness score

98.8

contamination score

0

environmental medium

tectonic lake

geographic location (latitude)

37.47469

scientific_name

Candidatus Pelagibacterales bacterium

local environmental context

freshwater lake

metagenomic source

lake water metagenome

project name

PRJEB86003

completeness software

CheckM

geographic location (country and/or sea)

Japan

isolation_source

Lake Inawashiro

Freshwater metagenome from Lake Inawashiro, Japan, 5 m depth, 25-Sep-2023

BioSample Accession(s)

SAMEA117739261, ERS23657625

ENA-CHECKLIST

ERC000024

altitude

514

salinity

0.05

organism

lake water metagenome

broad-scale environmental context

freshwater biome

collection date

2022-09-25

chlorophyll

0.54

geographic location (longitude)

140.09883

environmental medium

tectonic lake

geographic location (latitude)

37.474693

scientific_name

lake water metagenome

size-fraction lower threshold

0.22

size-fraction upper threshold

5

total depth of water column

94

local environmental context

freshwater lake biome

depth

5

conductivity

0.1163

project name

PRJEB86003

oxygenation status of sample

aerobic

pH

7.08

temperature

21.02

geographic location (country and/or sea)

Japan

Metadata as EBI XML

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  </IDENTIFIERS>
  <TITLE>PromethION sequencing</TITLE>
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      <SECONDARY_ID>PRJEB86003</SECONDARY_ID>
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  <DESIGN>
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Metadata as EBI XML

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  <TITLE>Illumina NovaSeq 6000 paired end sequencing</TITLE>
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