This sample represents a MAG derived from the metagenomic sample ERS16511554

BioSample Accession(s)

SAMEA114857372, ERS17282684

ENA-CHECKLIST

ERC000047

assembly software

metaFlye

binning software

mmlong2

organism

uncultured Dermatophilaceae bacterium

broad-scale environmental context

aquatic biome [ENVO:00002030]

assembly quality

Multiple fragments where gaps span repetitive regions. Presence of the 23S, 16S, and 5S rRNA genes and at least 18 tRNAs

collection date

2021-11-02

sample derived from

ERS16511554

geographic location (longitude)

9.864788

taxonomic identity marker

multi-marker

binning parameters

Automated contig binning was performed using the ensemble method with Metabat2 v2.15, MaxBin2 v2.2.7, Vamb v3.0.7, and Metabinner v1.4.3 and Das Tool v1.1.3.

completeness score

97.3

contamination score

0

environmental medium

Activated Sludge [ENVO:00002046]

geographic location (latitude)

57.049513

scientific_name

uncultured Dermatophilaceae bacterium

taxonomic classification

Intrasporangiaceae bacterium

local environmental context

Waste Water [ENVO:00002001]

metagenomic source

wastewater metagenome

project name

PRJEB67571

completeness software

Checkm1

geographic location (country and/or sea)

Denmark

isolation_source

Aerationn tank from Aalborg West wastewater treatment plant

wastewater metagenome

BioSample Accession(s)

SAMEA114530218, ERS16511554

ENA-CHECKLIST

ERC000023

local environmental context

Waste Water [ENVO:00002001]

organism

wastewater metagenome

project name

Glomicave

broad-scale environmental context

aquatic biome [ENVO:00002030]

collection date

2021-11-02

geographic location (longitude)

9.864788

environmental medium

Activated Sludge [ENVO:00002046]

geographic location (latitude)

57.049513

scientific_name

wastewater metagenome

geographic location (country and/or sea)

Denmark

ENA-LAST-UPDATE

2023-10-24

Metadata as EBI XML

<EXPERIMENT_SET>
<EXPERIMENT accession="ERX11571611" alias="webin-reads-AalW-IL" center_name="AALBORG UNIVERSITY">
  <IDENTIFIERS>
    <PRIMARY_ID>ERX11571611</PRIMARY_ID>
    <SUBMITTER_ID namespace="AALBORG UNIVERSITY">webin-reads-AalW-IL</SUBMITTER_ID>
  </IDENTIFIERS>
  <TITLE>Raw reads: AalW-IL</TITLE>
  <STUDY_REF accession="ERP152598">
    <IDENTIFIERS>
      <PRIMARY_ID>ERP152598</PRIMARY_ID>
      <SECONDARY_ID>PRJEB67571</SECONDARY_ID>
    </IDENTIFIERS>
  </STUDY_REF>
  <DESIGN>
    <DESIGN_DESCRIPTION>unspecified</DESIGN_DESCRIPTION>
    <SAMPLE_DESCRIPTOR accession="ERS16511554">
      <IDENTIFIERS>
        <PRIMARY_ID>ERS16511554</PRIMARY_ID>
        <EXTERNAL_ID namespace="BioSample">SAMEA114530218</EXTERNAL_ID>
      </IDENTIFIERS>
    </SAMPLE_DESCRIPTOR>
    <LIBRARY_DESCRIPTOR>
      <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
      <LIBRARY_SOURCE>METAGENOMIC</LIBRARY_SOURCE>
      <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
      <LIBRARY_LAYOUT>
        <SINGLE/>
      </LIBRARY_LAYOUT>
    </LIBRARY_DESCRIPTOR>
  </DESIGN>
  <PLATFORM>
    <ILLUMINA>
      <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL>
    </ILLUMINA>
  </PLATFORM>
  <EXPERIMENT_LINKS>
    <EXPERIMENT_LINK>
      <XREF_LINK>
        <DB>ENA-SAMPLE</DB>
        <ID>ERS16511554</ID>
      </XREF_LINK>
    </EXPERIMENT_LINK>
    <EXPERIMENT_LINK>
      <XREF_LINK>
        <DB>ENA-SUBMISSION</DB>
        <ID>ERA27336118</ID>
      </XREF_LINK>
    </EXPERIMENT_LINK>
    <EXPERIMENT_LINK>
      <XREF_LINK>
        <DB>ENA-FASTQ-FILES</DB>
        <ID><![CDATA[https://www.ebi.ac.uk/ena/portal/api/filereport?accession=ERX11571611&result=read_run&fields=run_accession,fastq_ftp,fastq_md5,fastq_bytes]]></ID>
      </XREF_LINK>
    </EXPERIMENT_LINK>
    <EXPERIMENT_LINK>
      <XREF_LINK>
        <DB>ENA-SUBMITTED-FILES</DB>
        <ID><![CDATA[https://www.ebi.ac.uk/ena/portal/api/filereport?accession=ERX11571611&result=read_run&fields=run_accession,submitted_ftp,submitted_md5,submitted_bytes,submitted_format]]></ID>
      </XREF_LINK>
    </EXPERIMENT_LINK>
  </EXPERIMENT_LINKS>
</EXPERIMENT>
</EXPERIMENT_SET>

Metadata as EBI XML

<EXPERIMENT_SET>
<EXPERIMENT accession="ERX11571834" alias="webin-reads-AalW-NP" center_name="AALBORG UNIVERSITY">
  <IDENTIFIERS>
    <PRIMARY_ID>ERX11571834</PRIMARY_ID>
    <SUBMITTER_ID namespace="AALBORG UNIVERSITY">webin-reads-AalW-NP</SUBMITTER_ID>
  </IDENTIFIERS>
  <TITLE>Raw reads: AalW-NP</TITLE>
  <STUDY_REF accession="ERP152598">
    <IDENTIFIERS>
      <PRIMARY_ID>ERP152598</PRIMARY_ID>
      <SECONDARY_ID>PRJEB67571</SECONDARY_ID>
    </IDENTIFIERS>
  </STUDY_REF>
  <DESIGN>
    <DESIGN_DESCRIPTION>unspecified</DESIGN_DESCRIPTION>
    <SAMPLE_DESCRIPTOR accession="ERS16511554">
      <IDENTIFIERS>
        <PRIMARY_ID>ERS16511554</PRIMARY_ID>
        <EXTERNAL_ID namespace="BioSample">SAMEA114530218</EXTERNAL_ID>
      </IDENTIFIERS>
    </SAMPLE_DESCRIPTOR>
    <LIBRARY_DESCRIPTOR>
      <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
      <LIBRARY_SOURCE>METAGENOMIC</LIBRARY_SOURCE>
      <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
      <LIBRARY_LAYOUT>
        <SINGLE/>
      </LIBRARY_LAYOUT>
    </LIBRARY_DESCRIPTOR>
  </DESIGN>
  <PLATFORM>
    <OXFORD_NANOPORE>
      <INSTRUMENT_MODEL>GridION</INSTRUMENT_MODEL>
    </OXFORD_NANOPORE>
  </PLATFORM>
  <EXPERIMENT_LINKS>
    <EXPERIMENT_LINK>
      <XREF_LINK>
        <DB>ENA-SAMPLE</DB>
        <ID>ERS16511554</ID>
      </XREF_LINK>
    </EXPERIMENT_LINK>
    <EXPERIMENT_LINK>
      <XREF_LINK>
        <DB>ENA-SUBMISSION</DB>
        <ID>ERA27336169</ID>
      </XREF_LINK>
    </EXPERIMENT_LINK>
    <EXPERIMENT_LINK>
      <XREF_LINK>
        <DB>ENA-FASTQ-FILES</DB>
        <ID><![CDATA[https://www.ebi.ac.uk/ena/portal/api/filereport?accession=ERX11571834&result=read_run&fields=run_accession,fastq_ftp,fastq_md5,fastq_bytes]]></ID>
      </XREF_LINK>
    </EXPERIMENT_LINK>
    <EXPERIMENT_LINK>
      <XREF_LINK>
        <DB>ENA-SUBMITTED-FILES</DB>
        <ID><![CDATA[https://www.ebi.ac.uk/ena/portal/api/filereport?accession=ERX11571834&result=read_run&fields=run_accession,submitted_ftp,submitted_md5,submitted_bytes,submitted_format]]></ID>
      </XREF_LINK>
    </EXPERIMENT_LINK>
  </EXPERIMENT_LINKS>
</EXPERIMENT>
</EXPERIMENT_SET>