Keywords: GSC:MIxS;MIGS:5.0

BioSample Accession(s)

SAMN07786750, SRS2661868

strain

LSUCC0530

collection_date

2016-07-01

isol_growth_condt

https://www.biorxiv.org/content/early/2016/12/13/093567

ref_biomaterial

Primary publication

env_feature

ENVO:00000038

INSDC secondary accession

SRS2661868

organism

Candidatus Fonsibacter ubiquis

NCBI submission package

MIGS.ba.water.5.0

depth

1m

env_material

ENVO:00002006

num_replicons

1

geo_loc_name

USA:Lake Borgne

env_biome

ENVO:00002011

lat_lon

30.003299 N 89.826563 W

isolation_source

surface water

BioSampleModel

MIGS.ba

ENA-FIRST-PUBLIC

2017-10-15

ENA-LAST-UPDATE

2017-11-05

Metadata as EBI XML

<EXPERIMENT_SET>
<EXPERIMENT accession="SRX3364004" alias="LSUCC0530" center_name="SUB3195577" broker_name="NCBI">
  <IDENTIFIERS>
    <PRIMARY_ID>SRX3364004</PRIMARY_ID>
    <SUBMITTER_ID namespace="SUB3195577">LSUCC0530</SUBMITTER_ID>
  </IDENTIFIERS>
  <TITLE>Cultivation and genomics of the first freshwater SAR11 (LD12) isolate</TITLE>
  <STUDY_REF accession="SRP124087">
    <IDENTIFIERS>
      <PRIMARY_ID>SRP124087</PRIMARY_ID>
      <EXTERNAL_ID namespace="BioProject">PRJNA414342</EXTERNAL_ID>
    </IDENTIFIERS>
  </STUDY_REF>
  <DESIGN>
    <DESIGN_DESCRIPTION>genomic sequencing</DESIGN_DESCRIPTION>
    <SAMPLE_DESCRIPTOR accession="SRS2661868">
      <IDENTIFIERS>
        <PRIMARY_ID>SRS2661868</PRIMARY_ID>
        <EXTERNAL_ID namespace="BioSample">SAMN07786750</EXTERNAL_ID>
      </IDENTIFIERS>
    </SAMPLE_DESCRIPTOR>
    <LIBRARY_DESCRIPTOR>
      <LIBRARY_NAME>LSUCC0530</LIBRARY_NAME>
      <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
      <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
      <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
      <LIBRARY_LAYOUT>
        <PAIRED/>
      </LIBRARY_LAYOUT>
    </LIBRARY_DESCRIPTOR>
  </DESIGN>
  <PLATFORM>
    <ILLUMINA>
      <INSTRUMENT_MODEL>Illumina MiSeq</INSTRUMENT_MODEL>
    </ILLUMINA>
  </PLATFORM>
  <EXPERIMENT_LINKS>
    <EXPERIMENT_LINK>
      <XREF_LINK>
        <DB>ENA-SAMPLE</DB>
        <ID>SRS2661868</ID>
      </XREF_LINK>
    </EXPERIMENT_LINK>
    <EXPERIMENT_LINK>
      <XREF_LINK>
        <DB>ENA-SUBMISSION</DB>
        <ID>SRA628531</ID>
      </XREF_LINK>
    </EXPERIMENT_LINK>
    <EXPERIMENT_LINK>
      <XREF_LINK>
        <DB>ENA-FASTQ-FILES</DB>
        <ID><![CDATA[https://www.ebi.ac.uk/ena/portal/api/filereport?accession=SRX3364004&result=read_run&fields=run_accession,fastq_ftp,fastq_md5,fastq_bytes]]></ID>
      </XREF_LINK>
    </EXPERIMENT_LINK>
    <EXPERIMENT_LINK>
      <XREF_LINK>
        <DB>ENA-SUBMITTED-FILES</DB>
        <ID><![CDATA[https://www.ebi.ac.uk/ena/portal/api/filereport?accession=SRX3364004&result=read_run&fields=run_accession,submitted_ftp,submitted_md5,submitted_bytes,submitted_format]]></ID>
      </XREF_LINK>
    </EXPERIMENT_LINK>
  </EXPERIMENT_LINKS>
</EXPERIMENT>
</EXPERIMENT_SET>

Metadata as EBI XML

<EXPERIMENT_SET>
<EXPERIMENT accession="SRX3364059" alias="LSUCC0530_hiseq" center_name="SUB3195583" broker_name="NCBI">
  <IDENTIFIERS>
    <PRIMARY_ID>SRX3364059</PRIMARY_ID>
    <SUBMITTER_ID namespace="SUB3195583">LSUCC0530_hiseq</SUBMITTER_ID>
  </IDENTIFIERS>
  <TITLE>Cultivation and genomics of the first freshwater SAR11 (LD12) isolate</TITLE>
  <STUDY_REF accession="SRP124087">
    <IDENTIFIERS>
      <PRIMARY_ID>SRP124087</PRIMARY_ID>
      <EXTERNAL_ID namespace="BioProject">PRJNA414342</EXTERNAL_ID>
    </IDENTIFIERS>
  </STUDY_REF>
  <DESIGN>
    <DESIGN_DESCRIPTION>genomic sequencing</DESIGN_DESCRIPTION>
    <SAMPLE_DESCRIPTOR accession="SRS2661868">
      <IDENTIFIERS>
        <PRIMARY_ID>SRS2661868</PRIMARY_ID>
        <EXTERNAL_ID namespace="BioSample">SAMN07786750</EXTERNAL_ID>
      </IDENTIFIERS>
    </SAMPLE_DESCRIPTOR>
    <LIBRARY_DESCRIPTOR>
      <LIBRARY_NAME>LSUCC0530_hiseq</LIBRARY_NAME>
      <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
      <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
      <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
      <LIBRARY_LAYOUT>
        <PAIRED/>
      </LIBRARY_LAYOUT>
    </LIBRARY_DESCRIPTOR>
  </DESIGN>
  <PLATFORM>
    <ILLUMINA>
      <INSTRUMENT_MODEL>Illumina MiSeq</INSTRUMENT_MODEL>
    </ILLUMINA>
  </PLATFORM>
  <EXPERIMENT_LINKS>
    <EXPERIMENT_LINK>
      <XREF_LINK>
        <DB>ENA-SAMPLE</DB>
        <ID>SRS2661868</ID>
      </XREF_LINK>
    </EXPERIMENT_LINK>
    <EXPERIMENT_LINK>
      <XREF_LINK>
        <DB>ENA-SUBMISSION</DB>
        <ID>SRA628532</ID>
      </XREF_LINK>
    </EXPERIMENT_LINK>
    <EXPERIMENT_LINK>
      <XREF_LINK>
        <DB>ENA-FASTQ-FILES</DB>
        <ID><![CDATA[https://www.ebi.ac.uk/ena/portal/api/filereport?accession=SRX3364059&result=read_run&fields=run_accession,fastq_ftp,fastq_md5,fastq_bytes]]></ID>
      </XREF_LINK>
    </EXPERIMENT_LINK>
    <EXPERIMENT_LINK>
      <XREF_LINK>
        <DB>ENA-SUBMITTED-FILES</DB>
        <ID><![CDATA[https://www.ebi.ac.uk/ena/portal/api/filereport?accession=SRX3364059&result=read_run&fields=run_accession,submitted_ftp,submitted_md5,submitted_bytes,submitted_format]]></ID>
      </XREF_LINK>
    </EXPERIMENT_LINK>
  </EXPERIMENT_LINKS>
</EXPERIMENT>
</EXPERIMENT_SET>