Fontibacterium commune^Ts

Citation

Formal styling

Fontibacterium commune^Ts corrig. Henson et al., 2018 (priority 2025)

Effective publication

Henson et al., 2018

Corrigendum

In SeqCode Registry from “Fonsibacter ubiquis” (sic)

SeqCode status

Valid (SeqCode)

Register List

seqco.de/r:eh4rag03 (validated)

Canonical URL

https://seqco.de/i:457

Nomenclature

Rank

Species

Syllabication

com.mu'ne

Etymology

L. neut. adj. commune, common

Nomenclatural type

NCBI Assembly: GCA_002688585.1

Reference strain

Strain sc|0039474: LSUCC0530 Lookup StrainInfo

Nomenclatural status

Validly published under the SeqCode

Taxonomy

Description

In addition to the properties given in the genus description, the species is described as follows. Growth occurs at temperatures between 23 °C and 30 °C, but not at 11 °C or below, nor at 35 °C or above. Optimal salinity is 1.45 and below, and growth occurs between 0.36 and 4.68. At optimal temperature and salinity, cells divide at an average rate of 0.52 day^-1. Genome size is 1.16 Mbp, with 1271 predicted genes, and a GC content of 29.02% (calculated). LSUCC0530 had an ANI of 75.3 and 75.9% and an AAI of 58.1 and 59.7% with HIMB114 and IMCC9063, respectively. The genome is available on GenBank under accession number CP024034.

Notes

Oren et al., 2020 detected nomenclatural issues with the original spelling "Fonsibacter ubique" (sic) and proposed the orthographic variant "Allofontibacter communis"

Classification

Bacteria » Pseudomonadota » Alphaproteobacteria » “Pelagibacterales” » “Pelagibacteraceae” » Fontibacterium » Fontibacterium commune^Ts

Parent

Fontibacterium gtdb

Pseudonyms

• Allofontibacter communis (Misspelling or other orthographic variants)
• Fonsibacter ubiquis (Original, corrected name)

Genomics

Accession

NCBI Assembly:GCA_002688585.1

Cultures

Strain sc|0039474

Type

Isolate Genome

Estimated Quality Metrics

• Completeness: 96.2%
• Contamination: 0.9%
• Quality: 91.7

Ribosomal and transfer RNA genes

• 1 16S rRNA (up to 100.0%)
• 1 23S rRNA (up to 100.0%)
• tRNAs for 20 amino acids

Sequencing depth

100.0 ×

Source

• BioSample: SAMN07786750

Other features

• G+C Content: 29.02%
• Coding Density: 95.62%
• Codon Table: 11
• N50: 1,160,202 bp
• Contigs: 1
• Largest Contig: 1,160,202 bp
• Assembly Length: 1,160,202 bp
• Ambiguous Assembly Fraction: 0.0%

Automated checks

Complete

See additional details

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Last modified about 2 months ago

Metadata

Outside links and data sources

• GTDB Genome: GCA_002688585.1
• GTDB Tree: s__Fonsibacter ubiquis
• Wikispecies: Fontibacterium commune

Search sequences

• Seach in NCBI Nucleotide

Local history

• This name was last modified about 1 month ago
• Submission process status
• Quality checks before valid publication

Registered

About 6 years ago and claimed 2 months ago by Thrash, Cameron

Submitted

About 2 months ago by Rodriguez-R, Luis M

Curators

• Rodriguez-R, Luis M (genomics)
• Palmer, Marike (nomenclature)

Validated

About 1 month ago by Palmer, Marike

Date of priority

2025-05-14 06:29 PM (UTC)