Genome sc|0003657

Genomics

Accession

NCBI Assembly:GCF_004217665.1

Cultures

Strain sc|0039539

Type

Metagenome-Assembled Genome (MAG)

Estimated Quality Metrics

• Completeness: 97.4%
• Contamination: 3.8%
• Quality: 78.4

Ribosomal and transfer RNA genes

• 1 16S rRNA (up to 100.0%)
• 1 23S rRNA (up to 72.0%)
• tRNAs for 18 amino acids

Sequencing depth

72.0 ×

Source

• BioSample: SAMN10581107

Other features

• G+C Content: 52.5%
• Coding Density: 89.42%
• Codon Table: 11
• N50: 13,993 bp
• Contigs: 546
• Largest Contig: 72,815 bp
• Assembly Length: 4,143,644 bp
• Ambiguous Assembly Fraction: 0.57%

Submitter comments

Completeness and contamination rates were assessed using CheckM v. 1.0.12 (Parks et al., 2015) with the “lineage wf” command and default settings.

Automated checks

Complete

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Last modified 10 months ago

Sample Metadata

BioSample entries

• BioSample: SAMN10581107

Date

Collection Date: 2012-08

Location

Not detected

Toponym

Geo Loc Name: Russia: Republic of Buryatia

Environment

Sample Type: mixed culture

Isolation Source: freshwater sediment

Other

Not detected

Package

Ncbi Submission Package: Microbe.1.0

Biosamplemodel: Microbe, viral or environmental

All retrieved samples

• SAMN10581107: Microbe sample from Candidatus Magnetaquicoccus inordinatus

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Metadata retrieved 10 months ago