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Magnetaquicoccus inordinatusTs

Citation

Formal styling
Magnetaquicoccus inordinatusTs Koziaeva et al., 2019 (priority 2025)
Effective publication
Koziaeva et al., 2019
SeqCode status
Valid (SeqCode)
Register List
seqco.de/r:cxvs_ca1 (validated)
Canonical URL
https://seqco.de/i:43286

Nomenclature

Rank
Species
Syllabication
i.nor.di.na'tus
Etymology
L. masc. adj. inordinatus, not arranged
Nomenclatural type
NCBI Assembly: GCF_004217665.1
Reference strain
Strain sc|0039539: UR-1 Lookup StrainInfo
Nomenclatural status
Validly published under the SeqCode

Taxonomy

Description
Coccoid morphology and represents magnetite magnetosomes not organized in chains and clustered in one side of the cell. 
Classification
Bacteria » Pseudomonadota » Alphaproteobacteria » Magnetococcales » Magnetaquicoccaceae » Magnetaquicoccus » Magnetaquicoccus inordinatusTs
Parent
Magnetaquicoccus gtdb assigned in Koziaeva et al., 2019

Genomics

Accession
NCBI Assembly:GCF_004217665.1
Cultures
Strain sc|0039539
Type
Metagenome-Assembled Genome (MAG)
Estimated Quality Metrics
  • Completeness: 97.4%
  • Contamination: 3.8%
  • Quality: 78.4
Ribosomal and transfer RNA genes
  • 1 16S rRNA (up to 100.0%)
  • 1 23S rRNA (up to 72.0%)
  • tRNAs for 18 amino acids
Sequencing depth
72.0 ×
Source
Other features
  • G+C Content: 52.5%
  • Coding Density: 89.42%
  • Codon Table: 11
  • N50: 13,993 bp
  • Contigs: 546
  • Largest Contig: 72,815 bp
  • Assembly Length: 4,143,644 bp
  • Ambiguous Assembly Fraction: 0.57%
Submitter comments
Completeness and contamination rates were assessed using CheckM v. 1.0.12 (Parks et al., 2015) with the “lineage wf” command and default settings.
Automated checks
Complete
See additional details
Last modified about 2 months ago

Metadata

Outside links and data sources
Search sequences
Local history
Registered
Over 1 year ago and claimed 3 months ago by Grouzdev, Denis
Submitted
About 1 month ago by Grouzdev, Denis
Curators
Validated
9 days ago by Palmer, Marike
Date of priority
2025-06-15 11:58 AM (UTC)

Publications
1

Citation Title
Koziaeva et al., 2019, Frontiers in Microbiology Genome-Based Metabolic Reconstruction of a Novel Uncultivated Freshwater Magnetotactic coccus “Ca. Magnetaquicoccus inordinatus” UR-1, and Proposal of a Candidate Family “Ca. Magnetaquicoccaceae”
Effective publication
Assigned this taxon


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seqco.de/r:cxvs_ca1