Genome sc|0003918

Genomics

Accession

NCBI Assembly:GCA_009387755.1

Type

Metagenome-Assembled Genome (MAG)

Estimated Quality Metrics

• Completeness: 92.3%
• Contamination: 0.0%
• Quality: 92.3

Ribosomal and transfer RNA genes

• 2 16S rRNAs (up to 66.0%)
• 1 23S rRNA (up to 100.0%)
• tRNAs for 20 amino acids

Source

• BioSample: SAMN13091869

Other features

• G+C Content: 47.27%
• Coding Density: 91.07%
• Codon Table: 11
• N50: 322,920 bp
• Contigs: 8
• Largest Contig: 335,072 bp
• Assembly Length: 1,010,785 bp
• Ambiguous Assembly Fraction: 0.0%

Automated checks

Complete

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Last modified 5 months ago

Sample Metadata

BioSample entries

• BioSample: SAMN13091869

Date

Collection Date: 2005

Location

Lat Lon: 40° 40′ 48″ N, 122° 12′ W

View map of sampling locations

Toponym

Geo Loc Name: USA: Richmond Mine at Iron Mountain, CA (elevation 3100 ft.)

Environment

Sample Type: metagenomic assembly

Isolation Source: combined biofilm from UBA (pink subaerial biofilm) and UBA BS (thick floating biofilm subdivided into strips) samples

Other

Not detected

Package

Ncbi Submission Package: MIMAG.6.0

Biosamplemodel: MIMAG

Additional Accessions

SAMN02954270

All retrieved samples

• SAMN13091869: MIMAG Metagenome-assembled Genome sample from Candidatus Micrarchaeum acidiphilum ARMAN-2

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Metadata retrieved 5 months ago