BioSample Accession(s)

SAMN10160529, SRS3875299

collected by

Margarete Nawrath

collection date

2017

culture collection

DSM:32899

geo loc name

Singapore:Jurong Island

isolation source

soil

sample type

single isolate

strain

DSM 32899

type-material

reference strain of Pantoea soli

Metadata as EBI XML

<EXPERIMENT_SET>
<EXPERIMENT accession="SRX4796149" alias="P37_oxford_seq" center_name="SUB4584924" broker_name="NCBI">
  <IDENTIFIERS>
    <PRIMARY_ID>SRX4796149</PRIMARY_ID>
    <SUBMITTER_ID namespace="SUB4584924">P37_oxford_seq</SUBMITTER_ID>
  </IDENTIFIERS>
  <TITLE>Oxford Nanopore Sequencing (Minion) of Pantoea dispersa DSM 32899</TITLE>
  <STUDY_REF accession="SRP163301">
    <IDENTIFIERS>
      <PRIMARY_ID>SRP163301</PRIMARY_ID>
      <EXTERNAL_ID namespace="BioProject">PRJNA494309</EXTERNAL_ID>
    </IDENTIFIERS>
  </STUDY_REF>
  <DESIGN>
    <DESIGN_DESCRIPTION>Minion Sequencing</DESIGN_DESCRIPTION>
    <SAMPLE_DESCRIPTOR accession="SRS3875299">
      <IDENTIFIERS>
        <PRIMARY_ID>SRS3875299</PRIMARY_ID>
        <EXTERNAL_ID namespace="BioSample">SAMN10160529</EXTERNAL_ID>
      </IDENTIFIERS>
    </SAMPLE_DESCRIPTOR>
    <LIBRARY_DESCRIPTOR>
      <LIBRARY_NAME>P37_oxford_seq</LIBRARY_NAME>
      <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
      <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
      <LIBRARY_SELECTION>unspecified</LIBRARY_SELECTION>
      <LIBRARY_LAYOUT>
        <SINGLE/>
      </LIBRARY_LAYOUT>
    </LIBRARY_DESCRIPTOR>
  </DESIGN>
  <PLATFORM>
    <OXFORD_NANOPORE>
      <INSTRUMENT_MODEL>MinION</INSTRUMENT_MODEL>
    </OXFORD_NANOPORE>
  </PLATFORM>
  <EXPERIMENT_LINKS>
    <EXPERIMENT_LINK>
      <XREF_LINK>
        <DB>ENA-SAMPLE</DB>
        <ID>SRS3875299</ID>
      </XREF_LINK>
    </EXPERIMENT_LINK>
    <EXPERIMENT_LINK>
      <XREF_LINK>
        <DB>ENA-SUBMISSION</DB>
        <ID>SRA787631</ID>
      </XREF_LINK>
    </EXPERIMENT_LINK>
    <EXPERIMENT_LINK>
      <XREF_LINK>
        <DB>ENA-FASTQ-FILES</DB>
        <ID><![CDATA[https://www.ebi.ac.uk/ena/portal/api/filereport?accession=SRX4796149&result=read_run&fields=run_accession,fastq_ftp,fastq_md5,fastq_bytes]]></ID>
      </XREF_LINK>
    </EXPERIMENT_LINK>
    <EXPERIMENT_LINK>
      <XREF_LINK>
        <DB>ENA-SUBMITTED-FILES</DB>
        <ID><![CDATA[https://www.ebi.ac.uk/ena/portal/api/filereport?accession=SRX4796149&result=read_run&fields=run_accession,submitted_ftp,submitted_md5,submitted_bytes,submitted_format]]></ID>
      </XREF_LINK>
    </EXPERIMENT_LINK>
  </EXPERIMENT_LINKS>
</EXPERIMENT>
</EXPERIMENT_SET>

Metadata as EBI XML

<EXPERIMENT_SET>
<EXPERIMENT accession="SRX4796148" alias="P37_illumina_seq" center_name="SUB4584924" broker_name="NCBI">
  <IDENTIFIERS>
    <PRIMARY_ID>SRX4796148</PRIMARY_ID>
    <SUBMITTER_ID namespace="SUB4584924">P37_illumina_seq</SUBMITTER_ID>
  </IDENTIFIERS>
  <TITLE>Illumina Sequencing of Pantoea dispersa DSM 32899</TITLE>
  <STUDY_REF accession="SRP163301">
    <IDENTIFIERS>
      <PRIMARY_ID>SRP163301</PRIMARY_ID>
      <EXTERNAL_ID namespace="BioProject">PRJNA494309</EXTERNAL_ID>
    </IDENTIFIERS>
  </STUDY_REF>
  <DESIGN>
    <DESIGN_DESCRIPTION>Illumina Sequencing</DESIGN_DESCRIPTION>
    <SAMPLE_DESCRIPTOR accession="SRS3875299">
      <IDENTIFIERS>
        <PRIMARY_ID>SRS3875299</PRIMARY_ID>
        <EXTERNAL_ID namespace="BioSample">SAMN10160529</EXTERNAL_ID>
      </IDENTIFIERS>
    </SAMPLE_DESCRIPTOR>
    <LIBRARY_DESCRIPTOR>
      <LIBRARY_NAME>P37_illumina_seq</LIBRARY_NAME>
      <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
      <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
      <LIBRARY_SELECTION>unspecified</LIBRARY_SELECTION>
      <LIBRARY_LAYOUT>
        <PAIRED/>
      </LIBRARY_LAYOUT>
    </LIBRARY_DESCRIPTOR>
  </DESIGN>
  <PLATFORM>
    <ILLUMINA>
      <INSTRUMENT_MODEL>Illumina MiSeq</INSTRUMENT_MODEL>
    </ILLUMINA>
  </PLATFORM>
  <EXPERIMENT_LINKS>
    <EXPERIMENT_LINK>
      <XREF_LINK>
        <DB>ENA-SAMPLE</DB>
        <ID>SRS3875299</ID>
      </XREF_LINK>
    </EXPERIMENT_LINK>
    <EXPERIMENT_LINK>
      <XREF_LINK>
        <DB>ENA-SUBMISSION</DB>
        <ID>SRA787631</ID>
      </XREF_LINK>
    </EXPERIMENT_LINK>
    <EXPERIMENT_LINK>
      <XREF_LINK>
        <DB>ENA-FASTQ-FILES</DB>
        <ID><![CDATA[https://www.ebi.ac.uk/ena/portal/api/filereport?accession=SRX4796148&result=read_run&fields=run_accession,fastq_ftp,fastq_md5,fastq_bytes]]></ID>
      </XREF_LINK>
    </EXPERIMENT_LINK>
    <EXPERIMENT_LINK>
      <XREF_LINK>
        <DB>ENA-SUBMITTED-FILES</DB>
        <ID><![CDATA[https://www.ebi.ac.uk/ena/portal/api/filereport?accession=SRX4796148&result=read_run&fields=run_accession,submitted_ftp,submitted_md5,submitted_bytes,submitted_format]]></ID>
      </XREF_LINK>
    </EXPERIMENT_LINK>
  </EXPERIMENT_LINKS>
</EXPERIMENT>
</EXPERIMENT_SET>