Pantoea soli

Citation

Formal styling

Pantoea soli Crosby et al., 2023

Effective publication

Crosby et al., 2023

SeqCode status

Valid (SeqCode)

Register List

seqco.de/r:xfaladud (validated)

Canonical URL

https://seqco.de/i:31362

Nomenclature

Rank

Species

Syllabication

so'li

Etymology

L. gen. n. soli, of soil

Nomenclatural type

NCBI Assembly: GCF_007833795.1

Nomenclatural status

Validly published under the SeqCode

Taxonomy

Description

The genome of a single strain, DSM 32899 was isolated from soil in Singapore. It splits off at a node that is basal to the P. eucrina/P. borealis group. The ANI between the genome of DSM 32899 and the P. eucrina/P. borealis genomes is below 85%, indicating that this represents a distinct species.

Classification

Bacteria » Pseudomonadota » Gammaproteobacteria » Enterobacterales » Erwiniaceae » Pantoea » Pantoea soli

Parent

Pantoea ncbigtdb

Genomics

Accession

NCBI Assembly:GCF_007833795.1

Type

Isolate Genome

Estimated Quality Metrics

• Completeness: 99.67%
• Contamination: 1.07%
• Quality: 94.32

Ribosomal and transfer RNA genes

• 7 16S rRNAs (up to 100.0%)
• 7 23S rRNAs (up to 100.0%)
• tRNAs for 20 amino acids

Sequencing depth

114.0 ×

Source

• BioSample: SAMN10160529

Other features

• G+C Content: 57.42%
• Coding Density: 86.62%
• Codon Table: 11
• N50: 3,758,528 bp
• Contigs: 5
• Largest Contig: 3,758,528 bp
• Assembly Length: 4,626,472 bp
• Ambiguous Assembly Fraction: 0.0%

Submitter comments

Quality assessed with CheckM v. 1. rRNA prediction performed with barrnap v. 0.9, and tRNA prediction performed with tRNAscan-SE v. 2.0.9.

Automated checks

Complete

See additional details

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Last modified about 1 month ago

Metadata

Outside links and data sources

• NCBI Taxonomy: 3098669
• GTDB Genome: GCF_007833795.1
• GTDB Tree: s__Pantoea soli
• Global Biodiversity Information Facility (GBIF)
• Wikispecies: Pantoea soli (see reference source)

Search sequences

• Seach in NCBI Nucleotide
• NCBI Genomes table

Local history

• This name was last modified 11 months ago
• Submission process status
• Quality checks before valid publication

Registered by

Palmer, Marike over 1 year ago

Submitted by

Palmer, Marike over 1 year ago

Curators

• Rodriguez-R, Luis M
• Chuvochina, Maria

Endorsed by

Chuvochina, Maria over 1 year ago

Validated by

Rodriguez-R, Luis M about 1 year ago

Date of priority

2023-11-15 01:31 PM (UTC)