Pantoea soli


Citation

Formal styling
Pantoea soli Crosby et al., 2023
Effective publication
Crosby et al., 2023
SeqCode status
Valid (SeqCode)
Register List
seqco.de/r:xfaladud (validated)
Cannonical URL
https://seqco.de/i:31362

Nomenclature

Rank
Species
Syllabication
so'li
Etymology
L. gen. n. soli, of soil
Nomenclatural type
NCBI Assembly: GCF_007833795.1
Nomenclatural status
Validly published under the SeqCode

Taxonomy

Description
The genome of a single strain, DSM 32899 was isolated from soil in Singapore. It splits off at a node that is basal to the P. eucrina/P. borealis group. The ANI between the genome of DSM 32899 and the P. eucrina/P. borealis genomes is below 85%, indicating that this represents a distinct species.
Classification
Bacteria » Pseudomonadota » Gammaproteobacteria » Enterobacterales » Erwiniaceae » Pantoea » Pantoea soli
Parent
Pantoea ncbigtdb

Genomics

Accession
NCBI Assembly:GCF_007833795.1
Type
Isolate Genome
Estimated Quality Metrics
  • Completeness: 99.67%
  • Contamination: 1.07%
  • Quality: 94.32
Ribosomal and transfer RNA genes
  • 7 16S rRNAs (up to 100.0%)
  • 7 23S rRNAs (up to 100.0%)
  • tRNAs for 20 amino acids
Sequencing depth
114.0 ×
Source
Other features
  • G+C Content: 57.42%
  • Coding Density: 86.62%
  • Codon Table: 11
  • N50: 3,758,528 bp
  • Contigs: 5
  • Largest Contig: 3,758,528 bp
  • Assembly Length: 4,626,472 bp
  • Ambiguous Assembly Fraction: 0.0%
Submitter comments
Quality assessed with CheckM v. 1. rRNA prediction performed with barrnap v. 0.9, and tRNA prediction performed with tRNAscan-SE v. 2.0.9.
Automated checks
Complete
See additional details

Metadata

Outside links and data sources
Search sequences
Local history
Registered by
Palmer, Marike 12 months ago
Submitted by
Palmer, Marike 10 months ago
Curators
Endorsed by
Chuvochina, Maria 10 months ago
Validated by
Rodriguez-R, Luis M 6 months ago

Publications
1

Citation Title
Crosby et al., 2023, Frontiers in Microbiology Genomic delineation and description of species and within-species lineages in the genus Pantoea
Effective publication



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