JSON

Genome sc|0000409

Name

Pantoea communis

Database

NCBI Assembly

Accession

GCF_011752685.1

Genomics

Accession
NCBI Assembly:GCF_011752685.1
Type
Isolate Genome
Estimated Quality Metrics
  • Completeness: 100.0%
  • Contamination: 1.58%
  • Quality: 92.1
Ribosomal and transfer RNA genes
  • 1 16S rRNA (up to 100.0%)
  • 2 23S rRNAs (up to 42.0%)
  • tRNAs for 20 amino acids
Sequencing depth
108.0 ×
Source
Other features
  • G+C Content: 53.67%
  • Coding Density: 87.14%
  • Codon Table: 11
  • N50: 233,234 bp
  • Contigs: 88
  • Largest Contig: 795,707 bp
  • Assembly Length: 5,857,934 bp
  • Ambiguous Assembly Fraction: 0.0%
Submitter comments
Quality assessed with CheckM v. 1. rRNA prediction performed with barrnap v. 0.9, and tRNA prediction performed with tRNAscan-SE v. 2.0.9.
Automated checks
Complete
Last modified 6 days ago

Sample Metadata

BioSample entries
Date
Collection Date: 2017-01-08
Location
Not detected
Toponym
Geo Loc Name: Brazil: Anavilhanas, AM
Environment
Sample Type: bacterial culture
Isolation Source: Atta laevigata fungus garden
Other
Not detected
Package
Ncbi Submission Package: Microbe.1.0
Biosamplemodel: Microbe, viral or environmental
All retrieved samples
Metadata retrieved 6 days ago

Sequencing Experiments

whole genome sequencing of garden bacteria: pantoea


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