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Pantoea deserta

Citation

Formal styling
Pantoea deserta Crosby et al., 2023
Effective publication
Crosby et al., 2023
SeqCode status
Valid (SeqCode)
Register List
seqco.de/r:xfaladud (validated)
Canonical URL
https://seqco.de/i:31370

Nomenclature

Rank
Species
Syllabication
de.ser'ta
Etymology
L. fem. part. adj. deserta, deserted, or alone, referring to the species being a sole representative at the time of description
Nomenclatural type
NCBI Assembly: GCF_003813865.1
Nomenclatural status
Validly published under the SeqCode

Taxonomy

Description
This species includes the genome of a single strain, RIT388, isolated from an Ayan tree (Distemonanthus benthamianus) known for its antifungal and antibacterial properties (Soutar and Stavrinides 2019), (Gan et al. 2020). This genome is located on the branch splitting off at the most basal node of the clade that includes P. septica, P. alvi, P. piersonii, and "P. latae".
Classification
Bacteria » Pseudomonadota » Gammaproteobacteria » Enterobacterales » Erwiniaceae » Pantoea » Pantoea deserta
Parent
Pantoea gtdb

Genomics

Accession
NCBI Assembly:GCF_003813865.1
Type
Isolate Genome
Estimated Quality Metrics
  • Completeness: 99.99%
  • Contamination: 0.28%
  • Quality: 98.59
Ribosomal and transfer RNA genes
  • 1 16S rRNA (up to 100.0%)
  • 1 23S rRNA (up to 100.0%)
  • tRNAs for 18 amino acids
Sequencing depth
57.0 ×
Source
Other features
  • G+C Content: 56.96%
  • Coding Density: 86.71%
  • Codon Table: 11
  • N50: 221,699 bp
  • Contigs: 68
  • Largest Contig: 565,900 bp
  • Assembly Length: 5,010,327 bp
  • Ambiguous Assembly Fraction: 0.0%
Submitter comments
Quality assessed with CheckM v. 1. rRNA prediction performed with barrnap v. 0.9, and tRNA prediction performed with tRNAscan-SE v. 2.0.9.
Automated checks
Complete
See additional details
Last modified about 1 year ago

Metadata

Outside links and data sources
Search sequences
Local history
Registered
Over 2 years ago by Palmer, Marike
Submitted
Over 2 years ago by Palmer, Marike
Curators
Endorsed
Over 2 years ago by Chuvochina, Maria
Validated
Almost 2 years ago by Rodriguez-R, Luis M
Date of priority
2023-11-15 01:31 PM (UTC)

Publications
1

Citation Title
Crosby et al., 2023, Frontiers in Microbiology Genomic delineation and description of species and within-species lineages in the genus Pantoea
Effective publication


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