SeqCode Registry
cognitis nomina
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Genomes
sc|0000412
JSON
Genome sc|0000412
Name
Pantoea alvi
Database
NCBI Assembly
Accession
GCF_002920175.1
Genomics
Accession
NCBI Assembly:
GCF_002920175.1
Type
Isolate Genome
Estimated Quality Metrics
Completeness:
99.99%
Contamination:
0.18%
Quality:
99.09
Ribosomal and transfer RNA genes
1 16S rRNA (up to 100.0%)
1 23S rRNA (up to 100.0%)
tRNAs for 19 amino acids
Sequencing depth
72.0 ×
Source
SRA: SRX3652526
Other features
G+C Content:
57.91%
Coding Density:
86.24%
Codon Table:
11
N50:
347,536 bp
Contigs:
70
Largest Contig:
524,186 bp
Assembly Length:
5,351,126 bp
Ambiguous Assembly Fraction:
0.0%
Submitter comments
Quality assessed with CheckM v. 1. rRNA prediction performed with barrnap v. 0.9, and tRNA prediction performed with tRNAscan-SE v. 2.0.9.
Automated checks
Complete
Sample Metadata
Date
Collection Date:
2015
Location
Lat Lon:
38.984652 N 77.094709 W
Toponym
Geo Loc Name:
USA
Environment
Env Biome:
human-associated habitat
Other
Not detected
Package
Ncbi Submission Package:
MIGS.ba.5.0
Biosamplemodel:
MIGS.ba
All retrieved samples
SRS2916983
: Pantoea sp. PSNIH6
Metadata retrieved
9 months ago
© 2022-2024 The SeqCode Initiative
All information contributed to the SeqCode Registry is released under the terms of the
Creative Commons Attribution (CC BY) 4.0
license
Automated Estimates
×
This genome was automatically retrieved and processed using MiGA (The Microbial Genomes Atlas)
[1]
, and the estimate has not been overridden by the submitter.
Rodriguez-R et al, 2018, NAR.
DOI: 10.1093/nar/gky467
SRS2916983
×
Retrieved via SRX3652526
Keywords: GSC:MIxS;MIGS:5.0
strain
PSNIH6
INSDC secondary accession
SRS2916983
NCBI submission package
MIGS.ba.5.0
lat lon
38.984652 N 77.094709 W
organism
Pantoea sp. PSNIH6
collection date
2015
geo loc name
USA
env biome
human-associated habitat
BioSampleModel
MIGS.ba
ENA-FIRST-PUBLIC
2015-11-23
ENA-LAST-UPDATE
2018-07-10
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