Pantoea astica

Citation

Formal styling

Pantoea astica Crosby et al., 2023

Effective publication

Crosby et al., 2023

SeqCode status

Valid (SeqCode)

Register List

seqco.de/r:xfaladud (validated)

Canonical URL

https://seqco.de/i:31358

Nomenclature

Rank

Species

Syllabication

as.ti'ca

Etymology

N.L. fem. adj. astica, of a city (from Gr. masc. adj. astikós, of a city) referring to the recovery of this organism from New York City, NY, USA

Nomenclatural type

NCBI Assembly: GCA_002434205.1

Nomenclatural status

Validly published under the SeqCode

Taxonomy

Description

This species consists of a single MAG, UBA6564, which was assembled from a metal surface in New York City. P. conspicua is the most closely related known species, and the ANI between P. astica UBA6564 and the P. conspicua type strain is below 95% confirming that this genome represents a separate species.

Classification

Bacteria » Pseudomonadota » Gammaproteobacteria » Enterobacterales » Erwiniaceae » Pantoea » Pantoea astica

Parent

Pantoea gtdb

Genomics

Accession

NCBI Assembly:GCA_002434205.1

Type

Metagenome-Assembled Genome (MAG)

Estimated Quality Metrics

• Completeness: 99.92%
• Contamination: 0.58%
• Quality: 97.02

Ribosomal and transfer RNA genes

• 0 16S rRNAs
• 0 23S rRNAs
• tRNAs for 17 amino acids

Sequencing depth

21.64 ×

Source

• BioSample: SAMN06457759
• BioSample: SAMN03270639

Other features

• G+C Content: 56.14%
• Coding Density: 87.07%
• Codon Table: 11
• N50: 210,842 bp
• Contigs: 42
• Largest Contig: 376,525 bp
• Assembly Length: 4,491,069 bp
• Ambiguous Assembly Fraction: 0.08%

Submitter comments

Quality assessed with CheckM v. 1. rRNA prediction performed with barrnap v. 0.9, and tRNA prediction performed with tRNAscan-SE v. 2.0.9.

Automated checks

Complete

See additional details

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Last modified 6 days ago

Metadata

Outside links and data sources

• GTDB Genome: GCA_002434205.1
• GTDB Tree: s__Pantoea astica
• Global Biodiversity Information Facility (GBIF)
• Wikispecies: Pantoea astica (see reference source)

Search sequences

• Seach in NCBI Nucleotide

Local history

• This name was last modified 12 months ago
• Submission process status
• Quality checks before valid publication

Registered by

Palmer, Marike over 1 year ago

Submitted by

Palmer, Marike over 1 year ago

Curators

• Rodriguez-R, Luis M
• Chuvochina, Maria

Endorsed by

Chuvochina, Maria over 1 year ago

Validated by

Rodriguez-R, Luis M 12 months ago

Date of priority

2023-11-15 01:31 PM (UTC)