Genome sc|0004357


Database

NCBI Assembly

Accession

GCA_013698095.1

Genomics

Accession
NCBI Assembly:GCA_013698095.1
Type
Metagenome-Assembled Genome (MAG)
Estimated Quality Metrics
  • Completeness: 96.09%
  • Contamination: 2.78%
  • Quality: 82.19
Ribosomal and transfer RNA genes
  • 0 16S rRNAs
  • 0 23S rRNAs
  • tRNAs for 19 amino acids
Sequencing depth
29.74 ×
Source
Other features
  • G+C Content: 69.47%
  • Coding Density: 89.86%
  • Codon Table: 11
  • N50: 22,865 bp
  • Contigs: 261
  • Largest Contig: 75,948 bp
  • Assembly Length: 3,913,453 bp
  • Ambiguous Assembly Fraction: 0.0%
Submitter comments
Completeness and contamination of MAGs were assessed using CheckM v1.1.2
Automated checks
Complete

Last modified 4 months ago

Sample Metadata

BioSample entries
Date
Collection Date: 2015-01 • 2015-01-14 • 2015-01-16 • 2015-01-17 • 2015-01-11 • 2015-01-19 • 2015-01-22
Location
Lat Lon: 77° 0′ 50″ S, 161° 25′ 41″ E • 77° 0′ 57″ S, 161° 24′ 18″ E • 77° 0′ 40″ S, 161° 25′ 34″ E • 77° 0′ 53″ S, 161° 27′ 22″ E • 76° 28′ 12″ S, 161° 16′ 12″ E • 76° 29′ 37″ S, 162° 3′ 50″ E • 76° 5′ 47″ S, 162° 0′ 36″ E • 76° 34′ 49″ S, 161° 5′ 49″ E • 76° 34′ 17″ S, 161° 14′ 35″ E • 76° 23′ 34″ S, 161° 3′ 22″ E • 76° 26′ 14″ S, 161° 0′ 25″ E • 76° 31′ 12″ S, 161° 26′ 60″ E • 77° 39′ S, 163° 6′ 58″ E • 77° 0′ 14″ S, 162° 14′ 17″ E • 77° 1′ 39″ S, 161° 12′ 58″ E
View map of sampling locations
Toponym
Geo Loc Name: Antarctica: Mackay Glacier regions • Antarctica: Mackay Glacier regions, Mount Seuss • Antarctica: Mackay Glacier regions, Mackay Glacier • Antarctica: Mackay Glacier regions, Mount George Murray • Antarctica: Mackay Glacier regions, Mount Gran • Antarctica: Mackay Glacier regions, Towle Glacier • Antarctica: Mackay Glacier regions, Benson Glacier • Antarctica: Mackay Glacier regions, Spalding Pond • Antarctica: Mackay Glacier regions, Flatiron • Antarctica: Mackay Glacier regions, Pegtop Mountain
Environment
Sample Type: metagenomic assembly
Isolation Source: mineral soil
Env Broad Scale: polar desert biome [ENVO:01000186]
Env Medium: soil [ENVO:00001998]
Other
Ph: 7.74 • 7.77 • 10.24 • 9.2 • 7.53 • 7.86 • 7.65 • 8.17 • 7.94 • 7.76 • 8.66 • 7.95 • 8.20 • 9.74 • 10.2 • 8.21
Depth: 0 - 5 cm
Rel To Oxygen: aerobe
Package
Ncbi Submission Package: MIMAG.soil.6.0MIMS.me.soil.5.0
Biosamplemodel: MIMAG.soil • MIGS/MIMS/MIMARKS.soil
All retrieved samples

Metadata retrieved 4 months ago


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