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Edaphomicrobium jansseniiTs

Citation

Formal styling
Edaphomicrobium jansseniiTs Ortiz et al., 2021 (priority 2025)
Effective publication
Ortiz et al., 2021
SeqCode status
Valid (SeqCode)
Register List
seqco.de/r:lfje5-e8 (validated)
Canonical URL
https://seqco.de/i:52913

Nomenclature

Rank
Species
Syllabication
jans.sen'i.i.
Etymology
N.L. gen. n. janssenii, of Janssen, named after Peter H. Janssen, for his pioneering isolation-based studies that first described this lineage (Ellin6529)
Nomenclatural type
NCBI Assembly: GCA_013698095.1
Nomenclatural status
Validly published under the SeqCode

Taxonomy

Description
A Chloroflexota bacterium represented a high-quality metagenome-assembled genome (MAG), recovered from desert soils from the Mackay Glacier region, Antarctica. The bacterium is predicted to be an atmospheric hydrogen oxidizer using H2 (via a high-affinity group 1h [NiFe]-hydrogenase) from air as a key energy source for survival in oligotrophic desert soils. The species is proposed to serve as the nomenclatural type for the Edaphomicrobium genus, and honors Peter H. Janssen, for his pioneering isolation-based studies that first described the class lineage of this bacterium (Ellin6529, later named as Limnocylindria).
Classification
Bacteria » Chloroflexota » Candidatus Limnocylindria » Candidatus Limnocylindrales » Edaphomicrobiaceae » Edaphomicrobium » Edaphomicrobium jansseniiTs
Parent
Edaphomicrobium assigned in Ortiz et al., 2021
Pseudonyms
  • CF-46 sp013698095 (Alphanumeric placeholder accession)

Genomics

Accession
NCBI Assembly:GCA_013698095.1
Type
Metagenome-Assembled Genome (MAG)
Estimated Quality Metrics
  • Completeness: 96.09%
  • Contamination: 2.78%
  • Quality: 82.19
Ribosomal and transfer RNA genes
  • 0 16S rRNAs
  • 0 23S rRNAs
  • tRNAs for 19 amino acids
Sequencing depth
29.74 ×
Source
Other features
  • G+C Content: 69.47%
  • Coding Density: 89.86%
  • Codon Table: 11
  • N50: 22,865 bp
  • Contigs: 261
  • Largest Contig: 75,948 bp
  • Assembly Length: 3,913,453 bp
  • Ambiguous Assembly Fraction: 0.0%
Submitter comments
Completeness and contamination of MAGs were assessed using CheckM v1.1.2
Automated checks
Complete
See additional details
Last modified 4 months ago

Metadata

Outside links and data sources
Search sequences
Local history
Registered
5 months ago by Leung, Pok Man
Submitted
5 months ago by Leung, Pok Man
Curators
Validated
17 days ago by Palmer, Marike
Date of priority
2025-09-11 01:25 PM (UTC)

Publications
1

Citation Title
Ortiz et al., 2021, Proceedings of the National Academy of Sciences Multiple energy sources and metabolic strategies sustain microbial diversity in Antarctic desert soils
Effective publication
Assigned this taxon


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