BioSample Accession(s)

SRS18557283, SAMN36762656

collection_date

2023

geo_loc_name

India

host

Bombyx mori L.

sample_type

pure culture

strain

RAC2

type-material

reference material of Candidatus Stenotrophomonas raiganjensis

Metadata as EBI XML

<EXPERIMENT_SET>
<EXPERIMENT accession="SRX21309284" alias="rac2" center_name="SUB13748354" broker_name="NCBI">
  <IDENTIFIERS>
    <PRIMARY_ID>SRX21309284</PRIMARY_ID>
    <SUBMITTER_ID namespace="SUB13748354">rac2</SUBMITTER_ID>
  </IDENTIFIERS>
  <TITLE>Draft genome sequence of Stenotrophomonas sp. RAC2</TITLE>
  <STUDY_REF accession="SRP454143">
    <IDENTIFIERS>
      <PRIMARY_ID>SRP454143</PRIMARY_ID>
      <EXTERNAL_ID namespace="BioProject">PRJNA1000200</EXTERNAL_ID>
    </IDENTIFIERS>
  </STUDY_REF>
  <DESIGN>
    <DESIGN_DESCRIPTION>Isolated and sequenced from pure culture of RAC2</DESIGN_DESCRIPTION>
    <SAMPLE_DESCRIPTOR accession="SRS18557283">
      <IDENTIFIERS>
        <PRIMARY_ID>SRS18557283</PRIMARY_ID>
        <EXTERNAL_ID namespace="BioSample">SAMN36762656</EXTERNAL_ID>
      </IDENTIFIERS>
    </SAMPLE_DESCRIPTOR>
    <LIBRARY_DESCRIPTOR>
      <LIBRARY_NAME>rac2</LIBRARY_NAME>
      <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
      <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
      <LIBRARY_SELECTION>unspecified</LIBRARY_SELECTION>
      <LIBRARY_LAYOUT>
        <PAIRED/>
      </LIBRARY_LAYOUT>
    </LIBRARY_DESCRIPTOR>
  </DESIGN>
  <PLATFORM>
    <ILLUMINA>
      <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL>
    </ILLUMINA>
  </PLATFORM>
  <EXPERIMENT_LINKS>
    <EXPERIMENT_LINK>
      <XREF_LINK>
        <DB>ENA-SAMPLE</DB>
        <ID>SRS18557283</ID>
      </XREF_LINK>
    </EXPERIMENT_LINK>
    <EXPERIMENT_LINK>
      <XREF_LINK>
        <DB>ENA-SUBMISSION</DB>
        <ID>SRA1689384</ID>
      </XREF_LINK>
    </EXPERIMENT_LINK>
    <EXPERIMENT_LINK>
      <XREF_LINK>
        <DB>ENA-FASTQ-FILES</DB>
        <ID><![CDATA[https://www.ebi.ac.uk/ena/portal/api/filereport?accession=SRX21309284&result=read_run&fields=run_accession,fastq_ftp,fastq_md5,fastq_bytes]]></ID>
      </XREF_LINK>
    </EXPERIMENT_LINK>
    <EXPERIMENT_LINK>
      <XREF_LINK>
        <DB>ENA-SUBMITTED-FILES</DB>
        <ID><![CDATA[https://www.ebi.ac.uk/ena/portal/api/filereport?accession=SRX21309284&result=read_run&fields=run_accession,submitted_ftp,submitted_md5,submitted_bytes,submitted_format]]></ID>
      </XREF_LINK>
    </EXPERIMENT_LINK>
  </EXPERIMENT_LINKS>
  <EXPERIMENT_ATTRIBUTES>
    <EXPERIMENT_ATTRIBUTE>
      <TAG>ENA-STATUS-ID</TAG>
      <VALUE>4</VALUE>
    </EXPERIMENT_ATTRIBUTE>
  </EXPERIMENT_ATTRIBUTES>
</EXPERIMENT>
</EXPERIMENT_SET>

Metadata as EBI XML

<RUN_SET>
<RUN accession="SRR25580683" alias="RAC2_R1.fastp.fastq.gz" center_name="SUB13748354" broker_name="NCBI">
  <IDENTIFIERS>
    <PRIMARY_ID>SRR25580683</PRIMARY_ID>
    <SUBMITTER_ID label="0" namespace="SUB13748354">RAC2_R1.fastp.fastq.gz</SUBMITTER_ID>
  </IDENTIFIERS>
  <TITLE>Illumina NovaSeq 6000 paired end sequencing; Draft genome sequence of Stenotrophomonas sp. RAC2</TITLE>
  <EXPERIMENT_REF accession="SRX21309284">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX21309284</PRIMARY_ID>
      <SUBMITTER_ID namespace="SUB13748354">rac2</SUBMITTER_ID>
    </IDENTIFIERS>
  </EXPERIMENT_REF>
  <RUN_LINKS>
    <RUN_LINK>
      <XREF_LINK>
        <DB>ENA-SUBMISSION</DB>
        <ID>SRA1689384</ID>
      </XREF_LINK>
    </RUN_LINK>
    <RUN_LINK>
      <XREF_LINK>
        <DB>ENA-STUDY</DB>
        <ID>SRP454143</ID>
      </XREF_LINK>
    </RUN_LINK>
    <RUN_LINK>
      <XREF_LINK>
        <DB>ENA-SAMPLE</DB>
        <ID>SRS18557283</ID>
      </XREF_LINK>
    </RUN_LINK>
    <RUN_LINK>
      <XREF_LINK>
        <DB>ENA-FASTQ-FILES</DB>
        <ID><![CDATA[https://www.ebi.ac.uk/ena/portal/api/filereport?accession=SRR25580683&result=read_run&fields=run_accession,fastq_ftp,fastq_md5,fastq_bytes]]></ID>
      </XREF_LINK>
    </RUN_LINK>
    <RUN_LINK>
      <XREF_LINK>
        <DB>ENA-SUBMITTED-FILES</DB>
        <ID><![CDATA[https://www.ebi.ac.uk/ena/portal/api/filereport?accession=SRR25580683&result=read_run&fields=run_accession,submitted_ftp,submitted_md5,submitted_bytes,submitted_format]]></ID>
      </XREF_LINK>
    </RUN_LINK>
  </RUN_LINKS>
  <RUN_ATTRIBUTES>
    <RUN_ATTRIBUTE>
      <TAG>ENA-STATUS-ID</TAG>
      <VALUE>4</VALUE>
    </RUN_ATTRIBUTE>
    <RUN_ATTRIBUTE>
      <TAG>ENA-FIRST-PUBLIC</TAG>
      <VALUE>2023-08-10</VALUE>
    </RUN_ATTRIBUTE>
    <RUN_ATTRIBUTE>
      <TAG>ENA-LAST-UPDATE</TAG>
      <VALUE>2023-08-19</VALUE>
    </RUN_ATTRIBUTE>
    <RUN_ATTRIBUTE>
      <TAG>ENA-BASE-COUNT</TAG>
      <VALUE>6925710011</VALUE>
    </RUN_ATTRIBUTE>
    <RUN_ATTRIBUTE>
      <TAG>ENA-SPOT-COUNT</TAG>
      <VALUE>22500597</VALUE>
    </RUN_ATTRIBUTE>
  </RUN_ATTRIBUTES>
</RUN>
</RUN_SET>