SeqCode Registry
cognitis nomina
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Genomes
sc|0000438
JSON
Genome sc|0000438
Name
Binatus soli
Ts
Database
NCBI Assembly
Accession
GCA_002479255.1
Genomics
Accession
NCBI Assembly:
GCA_002479255.1
Type
Metagenome-Assembled Genome (MAG)
Estimated Quality Metrics
Completeness:
97.48%
Contamination:
0.84%
Quality:
93.28
Ribosomal and transfer RNA genes
1 16S rRNA (up to 100.0%)
2 23S rRNAs (up to 100.0%)
tRNAs for 19 amino acids
Sequencing depth
108.3 ×
Source
BioSample: SAMN06450843
BioSample: SAMN02364458
Other features
G+C Content:
61.34%
Coding Density:
89.08%
Codon Table:
11
N50:
138,054 bp
Contigs:
50
Largest Contig:
233,241 bp
Assembly Length:
3,671,360 bp
Ambiguous Assembly Fraction:
0.046%
Automated checks
Complete
Sample Metadata
Date
Collection Date:
2012-02-10
Location
Lat Lon:
47.5062 N 93.45426667 W
Toponym
Geo Loc Name:
USA: Marcell Experimental Forest • USA: MN, Marcell Experimental Forest
Environment
Sample Type:
metagenomic assembly
Isolation Source:
soil
Other
Depth:
25-50
Package
Ncbi Submission Package:
MIMS.me.soil.5.0
Biosamplemodel:
Microbe, viral or environmental • MIGS/MIMS/MIMARKS.soil
All retrieved samples
SAMN06450843
: Uncultivated bacterium UBP10_UBA7539 genome recovered from SRX461727
SAMN02364458
: bog25
Metadata retrieved
6 months ago
© 2022-2024 The SeqCode Initiative
All information contributed to the SeqCode Registry is released under the terms of the
Creative Commons Attribution (CC BY) 4.0
license
Automated Estimates
×
This genome was automatically retrieved and processed using MiGA (The Microbial Genomes Atlas)
[1]
, and the estimate has not been overridden by the submitter.
Rodriguez-R et al, 2018, NAR.
DOI: 10.1093/nar/gky467
SAMN06450843
×
quality_assessment_method_version
1.0.6
mapping_method
BWA (BWA-MEM)
INSDC secondary accession
SRS2033892
organism
Candidatus Binatus soli
mapping_method_version
0.7.12-r1039
isolation-source
soil
quality_assessment_method
CheckM
subsrc_note
Genome binned from sequencing reads available in SRX461727 metagenome
geo loc name
USA: Marcell Experimental Forest
metagenomic
true
assembly_method_version
4.4.1
environmental sample
true
metagenome source
soil metagenome
contamination_estimated
0.84%
isolate
UBA7539
assembly method
CLC de novo assembler
genome coverage
108.31
sample type
metagenomic assembly
value
This BioSample is a metagenomic assembly obtained from the soil metagenome reads: SRR1157609.
completeness_estimated
97.48%
BioSampleModel
Microbe, viral or environmental
ENA-FIRST-PUBLIC
2017-02-27
ENA-LAST-UPDATE
2020-08-26
SAMN02364458
×
5
INSDC secondary accession
SRS551057
organism
soil metagenome
collection date
2012-02-10
geo loc name
USA: MN, Marcell Experimental Forest
env package
MIGS/MIMS/MIMARKS.soil
investigation type
metagenome
NCBI submission package
MIMS.me.soil.5.0
depth
25-50
lat lon
47.5062 N 93.45426667 W
feature
bog
material
soil
project name
SPRUCE carbon cycle
biome
Forest
elev
125
BioSampleModel
MIGS/MIMS/MIMARKS.soil
ENA-FIRST-PUBLIC
2013-09-30
ENA-LAST-UPDATE
2021-02-28
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