Genome sc|0000439

Name

Hydrothermus pacificus^Ts

Database

NCBI Assembly

Accession

GCA_002011615.1

Genomics

Accession

NCBI Assembly:GCA_002011615.1

Type

Metagenome-Assembled Genome (MAG)

Estimated Quality Metrics

Completeness: 91.53%
Contamination: 0.0%
Quality: 91.53

Ribosomal and transfer RNA genes

1 16S rRNA (up to 100.0%)
1 23S rRNA (up to 100.0%)
tRNAs for 20 amino acids

Sequencing depth

42.1 ×

Source

Other features

G+C Content: 34.75%
Coding Density: 95.09%
Codon Table: 11
N50: 176,033 bp
Contigs: 19
Largest Contig: 342,452 bp
Assembly Length: 2,059,798 bp
Ambiguous Assembly Fraction: 0.0018%

Automated checks

Complete

Last modified over 1 year ago

Sample Metadata

BioSample entries

Date

Collection Date: 2011-07-12

Location

Lat Lon: 47° 45′ 36″ N, 127° 45′ 36″ W

View map of sampling locations

Toponym

Geo Loc Name: Pacific Ocean

Environment

Env Material: water

Sample Type: metagenomic assembly

Env Biome: hydrothermal fluid

Isolation Source: basaltic crustal fluids

Gold Ecosystem Classification: Environmental | Aquatic | Marine | Hydrothermal vents | Diffuse flow

Other

Depth: 454

Package

Ncbi Submission Package: Microbe.1.0 • MIMARKS.survey.sediment.6.0

Biosamplemodel: Microbe, viral or environmental • MIGS/MIMS/MIMARKS.sediment

All retrieved samples

Metadata retrieved over 1 year ago

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