Genome sc|0000441

Genomics

Accession

NCBI Assembly:GCA_001515205.2

Type

Metagenome-Assembled Genome (MAG)

Estimated Quality Metrics

• Completeness: 95.13%
• Contamination: 1.22%
• Quality: 89.03

Ribosomal and transfer RNA genes

• 2 16S rRNAs (up to 100.0%)
• 2 23S rRNAs (up to 100.0%)
• tRNAs for 20 amino acids

Sequencing depth

12.0 ×

Source

• BioSample: SAMN04159681
• BioSample: SAMN04386028

Other features

• G+C Content: 54.84%
• Coding Density: 91.21%
• Codon Table: 11
• N50: 23,895 bp
• Contigs: 64
• Largest Contig: 74,826 bp
• Assembly Length: 1,231,125 bp
• Ambiguous Assembly Fraction: 0.0%

Submitter comments

Completeness and contamination were calculated using Checkm2.

Automated checks

Complete

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Last modified over 1 year ago

Sample Metadata

BioSample entries

• BioSample: SAMN04159681
• BioSample: SAMN04386028

Date

Collection Date: 2014

Location

Lat Lon: 44° N, 110° W

View map of sampling locations

Toponym

Geo Loc Name: USA: Yellowstone National Park, Wyoming, lower Culex Basin hot spring

Environment

Env Material: hot spring sediments

Sample Type: metagenomic assembly

Env Biome: yellowstone National Park hot spring

Isolation Source: hot spring sediments

Other

Depth: 0-10cm

Rel To Oxygen: anaerobe

Package

Ncbi Submission Package: MIMS.me.sediment.6.0 • Metagenome.environmental.1.0

Biosamplemodel: MIGS/MIMS/MIMARKS.sediment • Metagenome or environmental

All retrieved samples

• SAMN04159681: MIMS Environmental/Metagenome sample from Candidatus Hadarchaeum yellowstonense
• SAMN04386028: Metagenome or environmental sample from hot springs metagenome

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Metadata retrieved over 1 year ago