Genome sc|0000441


Database

NCBI Assembly

Accession

GCA_001515205.2

Genomics

Accession
NCBI Assembly:GCA_001515205.2
Type
Metagenome-Assembled Genome (MAG)
Estimated Quality Metrics
  • Completeness: 95.13%
  • Contamination: 1.22%
  • Quality: 89.03
Ribosomal and transfer RNA genes
  • 2 16S rRNAs (up to 100.0%)
  • 2 23S rRNAs (up to 100.0%)
  • tRNAs for 20 amino acids
Sequencing depth
12.0 ×
Source
Other features
  • G+C Content: 54.84%
  • Coding Density: 91.21%
  • Codon Table: 11
  • N50: 23,895 bp
  • Contigs: 64
  • Largest Contig: 74,826 bp
  • Assembly Length: 1,231,125 bp
  • Ambiguous Assembly Fraction: 0.0%
Submitter comments
Completeness and contamination were calculated using Checkm2.
Automated checks
Complete

Sample Metadata

Date
Collection Date: 2014
Location
Lat Lon: 44 N 110 W
Toponym
Geo Loc Name: USA: Yellowstone National Park, Wyoming, lower Culex Basin hot spring
Environment
Env Material: hot spring sediments
Sample Type: metagenomic assembly
Env Biome: yellowstone National Park hot spring
Isolation Source: hot spring sediments
Other
Depth: 0-10cm
Rel To Oxygen: anaerobe
Package
Ncbi Submission Package: MIMS.me.sediment.5.0Metagenome.environmental.1.0
Biosamplemodel: MIGS/MIMS/MIMARKS.sediment • Metagenome or environmental
All retrieved samples

Metadata retrieved 5 months ago


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