Genome sc|0000448


Database

NCBI Assembly

Accession

GCA_001899175.1

Genomics

Accession
NCBI Assembly:GCA_001899175.1
Type
Metagenome-Assembled Genome (MAG)
Estimated Quality Metrics
  • Completeness: 96.99%
  • Contamination: 0.0%
  • Quality: 96.99
Ribosomal and transfer RNA genes
  • 1 16S rRNA (up to 100.0%)
  • 1 23S rRNA (up to 100.0%)
  • tRNAs for 19 amino acids
Sequencing depth
10.0 ×
Source
Other features
  • G+C Content: 59.43%
  • Coding Density: 92.0%
  • Codon Table: 11
  • N50: 375,615 bp
  • Contigs: 28
  • Largest Contig: 951,664 bp
  • Assembly Length: 3,272,986 bp
  • Ambiguous Assembly Fraction: 0.014%
Automated checks
Complete

Sample Metadata

Date
Collection Date: 2014-04-04
Location
Lat Lon: 33.9575 S 18.4606 E
Toponym
Geo Loc Name: South Africa: University of Cape Town
Environment
Env Material: biofilm
Sample Type: metagenomic assembly • Biofilm
Env Biome: Bioreactor
Isolation Source: Thiocyanate ramp bioreactor • Thiocyanate bioreactor
Other
Not detected
Package
Biosamplemodel: MIGS/MIMS/MIMARKS.wastewater • Metagenome or environmental
All retrieved samples

Metadata retrieved 5 months ago


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