SeqCode Registry
cognitis nomina
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Genomes
sc|0000453
JSON
Genome sc|0000453
Name
Obscuribacter phosphatis
Ts
Database
NCBI Assembly
Accession
GCA_001899315.1
Genomics
Accession
NCBI Assembly:
GCA_001899315.1
Type
Metagenome-Assembled Genome (MAG)
Estimated Quality Metrics
Completeness:
97.44%
Contamination:
2.28%
Quality:
86.04
Ribosomal and transfer RNA genes
1 16S rRNA (up to 100.0%)
1 23S rRNA (up to 100.0%)
tRNAs for 19 amino acids
Sequencing depth
20.0 ×
Source
BioSample: SAMN05890506
BioSample: SAMN05935458
Other features
G+C Content:
49.42%
Coding Density:
89.53%
Codon Table:
11
N50:
3,231,268 bp
Contigs:
8
Largest Contig:
3,231,268 bp
Assembly Length:
5,494,645 bp
Ambiguous Assembly Fraction:
0.53%
Automated checks
Complete
Last modified
about 1 month ago
Sample Metadata
BioSample entries
BioSample: SAMN05890506
BioSample: SAMN05935458
Date
Collection Date:
2011-02-16
Location
Lat Lon:
27.4954 S 153.01199999 E
Toponym
Geo Loc Name:
Australia: Brisbane
Environment
Sample Type:
metagenomic assembly
Isolation Source:
Activated sludge was sampled from two, 4-l enhanced biological phosphorus removal (EBPR) sequencing batch reactors seeded from Thornside Wastewater Treatment Plant, Queensland
Other
Not detected
Package
Ncbi Submission Package:
Metagenome.environmental.1.0
Biosamplemodel:
Metagenome or environmental
All retrieved samples
SAMN05890506
: Metagenome or environmental sample from an enhanced biological phosphorous removal sequencing batch reactor
SAMN05935458
: Metagenome or environmental sample from activated sludge metagenome
Metadata retrieved
about 1 month ago
© 2022-2024 The SeqCode Initiative
All information contributed to the SeqCode Registry is released under the terms of the
Creative Commons Attribution (CC BY) 4.0
license
Automated Estimates
×
This genome was automatically retrieved and processed using MiGA (The Microbial Genomes Atlas)
[1]
, and the estimate has not been overridden by the submitter.
Rodriguez-R et al, 2018, NAR.
DOI: 10.1093/nar/gky467
SAMN05890506
×
Metadata retrieved using the EBI API
BioSample Accession(s)
SAMN05890506
collection_date
2011-02-16
note
This biosample is a metagenomic assembly obtained from the activated sludge metagenome BioSample: SAMN05935458.
ref_biomaterial
An Expanded Genomic Representation of the Phylum Cyanobacteria
organism
Candidatus Obscuribacter phosphatis
metagenomic
TRUE
environmental-sample
TRUE
metagenome-source
activated sludge metagenome
isolate
EBPR_351
NCBI submission package
Metagenome.environmental.1.0
geo_loc_name
Australia: Brisbane
lat_lon
27.4954 S 153.01199999 E
isolation_source
Activated sludge was sampled from two, 4-l enhanced biological phosphorus removal (EBPR) sequencing batch reactors seeded from Thornside Wastewater Treatment Plant, Queensland
sample-type
metagenomic assembly
BioSampleModel
Metagenome or environmental
ENA-FIRST-PUBLIC
2016-10-11
ENA-LAST-UPDATE
2021-09-26
SAMN05935458
×
Metadata retrieved using the EBI API
BioSample Accession(s)
SAMN05935458
collection_date
2011-02-16
NCBI submission package
Metagenome.environmental.1.0
organism
activated sludge metagenome
geo_loc_name
Australia: Brisbane
lat_lon
27.4954 S 153.01199999 E
isolation_source
Activated sludge was sampled from two, 4-l enhanced biological phosphorus removal (EBPR) sequencing batch reactors seeded from Thornside Wastewater Treatment Plant, Queensland
BioSampleModel
Metagenome or environmental
ENA-FIRST-PUBLIC
2016-10-23
ENA-LAST-UPDATE
2021-09-26
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