Obscuribacter phosphatisTs


Citation

Formal styling
Obscuribacter phosphatisTs Soo et al., 2014 (valid 2023)
Effective publication
Soo et al., 2014
SeqCode status
Valid (SeqCode)
Register List
seqco.de/r:j8zlzpo9 (validated)
Canonical URL
https://seqco.de/i:23547

Nomenclature

Rank
Species
Syllabication
phos.pha'tis
Etymology
N.L. gen. n. phosphatis, of phosphate, accumulating phosphate
Nomenclatural type
NCBI Assembly: GCA_001899315.1
Nomenclatural status
Validly published under the SeqCode

Taxonomy

Description
The description is the same as provided by Soo et al. (2014):
EBPR_351 representing the order Obscuribacterales is conspicuous among the Melainabacteria genomes because of its larger size (5 Mb) and associated metabolic versatility. Obscuribacter phosphatis contains the genes necessary for polyphosphate metabolism, including a low-affinity inorganic phosphate transporter (PiT), polyphosphate kinase 1 (used to synthesize or degrade polyP while consuming or generating, respectively, ATP directly), polyphosphate kinase 2 (degrades polyP producing GTP from GDP), exopolyphosphatase (degrades polyP in a nonreversible reaction that does not generate ATP directly), polyphosphate:AMP phosphotransferase and adenylate kinase (Seviour and Nielsen 2010). Obscuribacter phosphatis has the capacity for aerobic and anaerobic respiration, and fermentation, allowing it to function during both the oxic and anoxic phases of EBPR (Blackall et al. 2002). It contains genes encoding a complete respiratory chain including Complexes I, II, III, and IV and an F-Type ATPase.
Classification
Bacteria » Cyanobacteriota » Vampirovibrionophyceae » Obscuribacterales » Obscuribacteraceae » Obscuribacter » Obscuribacter phosphatisTs
Parent
Obscuribacter gtdb

Genomics

Accession
NCBI Assembly:GCA_001899315.1
Type
Metagenome-Assembled Genome (MAG)
Estimated Quality Metrics
  • Completeness: 97.44%
  • Contamination: 2.28%
  • Quality: 86.04
Ribosomal and transfer RNA genes
  • 1 16S rRNA (up to 100.0%)
  • 1 23S rRNA (up to 100.0%)
  • tRNAs for 19 amino acids
Sequencing depth
20.0 ×
Source
Other features
  • G+C Content: 49.42%
  • Coding Density: 89.53%
  • Codon Table: 11
  • N50: 3,231,268 bp
  • Contigs: 8
  • Largest Contig: 3,231,268 bp
  • Assembly Length: 5,494,645 bp
  • Ambiguous Assembly Fraction: 0.53%
Automated checks
Complete
See additional details

Last modified 4 days ago

Metadata

Outside links and data sources
Search sequences
Local history
Registered by
Soo, Rochelle over 2 years ago
Submitted by
Chuvochina, Maria about 1 year ago
Curators
Endorsed by
Palmer, Marike about 1 year ago
Validated by
Palmer, Marike about 1 year ago
Date of priority
2023-08-22 04:03 AM (UTC)

Publications
1

Citation Title
Soo et al., 2014, Genome Biology and Evolution An Expanded Genomic Representation of the Phylum Cyanobacteria
Effective publication



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