Genome sc|0000456


Database

NCBI Assembly

Accession

GCF_000392435.1

Genomics

Accession
NCBI Assembly:GCF_000392435.1
Type
Metagenome-Assembled Genome (MAG)
Estimated Quality Metrics
  • Completeness: 99.75%
  • Contamination: 0.33%
  • Quality: 98.1
Ribosomal and transfer RNA genes
  • 1 16S rRNA (up to 100.0%)
  • 1 23S rRNA (up to 100.0%)
  • tRNAs for 19 amino acids
Sequencing depth
890.0 ×
Source
Other features
  • G+C Content: 48.51%
  • Coding Density: 91.09%
  • Codon Table: 11
  • N50: 1,013,781 bp
  • Contigs: 1
  • Largest Contig: 1,013,781 bp
  • Assembly Length: 1,013,781 bp
  • Ambiguous Assembly Fraction: 0.0%
Submitter comments
CheckM2 was used to estimate genome completeness and contamination.

Chklovski, A., Parks, D.H., Woodcroft, B.J. et al. CheckM2: a rapid, scalable and accurate tool for assessing microbial genome quality using machine learning. Nat Methods 20, 1203–1212 (2023). https://doi.org/10.1038/s41592-023-01940-w
Automated checks
Complete

Sample Metadata

Date
Not detected
Location
Not detected
Toponym
Not detected
Environment
Not detected
Other
Not detected
Package
Ncbi Submission Package: Generic.1.0
Biosamplemodel: Generic
All retrieved samples

Metadata retrieved 5 months ago


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