Saccharimonas aalborgensis^Ts

Citation

Formal styling

Saccharimonas aalborgensis^Ts Albertsen et al., 2013 (valid 2023)

Effective publication

Albertsen et al., 2013

SeqCode status

Valid (SeqCode)

Register List

seqco.de/r:2jgcok0b (validated)

Canonical URL

https://seqco.de/i:31965

Nomenclature

Rank

Species

Syllabication

aal.borg.en'sis

Etymology

N.L. fem. adj. aalborgensis, pertaining to the city of Aalborg, where the sample containing the organism was obtained

Nomenclatural type

NCBI Assembly: GCF_000392435.1

Nomenclatural status

Validly published under the SeqCode

Taxonomy

Description

The description is the same as given by Albertsen et al., 2013:
“Candidatus Saccharimonas aalborgensis” has a coccus morphology with a size of ≈0.7 µm in diameter. It has obligate fermentative metabolism, fermenting glucose and other sugars, and produces lactate. It has a monoderm cell envelope and stains Gram-positive.

Classification

Bacteria » “Saccharimonadota” » “Saccharimonadia” » Saccharimonadales » Saccharimonadaceae » Saccharimonas » Saccharimonas aalborgensis^Ts

Parent

Saccharimonas gtdb

Genomics

Accession

NCBI Assembly:GCF_000392435.1

Type

Metagenome-Assembled Genome (MAG)

Estimated Quality Metrics

• Completeness: 99.75%
• Contamination: 0.33%
• Quality: 98.1

Ribosomal and transfer RNA genes

• 1 16S rRNA (up to 100.0%)
• 1 23S rRNA (up to 100.0%)
• tRNAs for 19 amino acids

Sequencing depth

890.0 ×

Source

• BioSample: SAMN02602963

Other features

• G+C Content: 48.51%
• Coding Density: 91.09%
• Codon Table: 11
• N50: 1,013,781 bp
• Contigs: 1
• Largest Contig: 1,013,781 bp
• Assembly Length: 1,013,781 bp
• Ambiguous Assembly Fraction: 0.0%

Submitter comments

CheckM2 was used to estimate genome completeness and contamination.

Chklovski, A., Parks, D.H., Woodcroft, B.J. et al. CheckM2: a rapid, scalable and accurate tool for assessing microbial genome quality using machine learning. Nat Methods 20, 1203–1212 (2023). https://doi.org/10.1038/s41592-023-01940-w

Automated checks

Complete

See additional details

---

Last modified 4 days ago

Metadata

Outside links and data sources

• GTDB Genome: GCF_000392435.1
• GTDB Tree: s__Saccharimonas aalborgensis
• Global Biodiversity Information Facility (GBIF)
• Wikispecies: Saccharimonas aalborgensis (see reference source)

Search sequences

• Seach in NCBI Nucleotide

Local history

• This name was last modified about 1 year ago
• Submission process status
• Quality checks before valid publication

Registered by

Chuvochina, Maria over 1 year ago

Submitted by

Chuvochina, Maria over 1 year ago

Curators

• Rodriguez-R, Luis M
• Palmer, Marike

Endorsed by

Palmer, Marike over 1 year ago

Validated by

Palmer, Marike about 1 year ago

Date of priority

2023-08-15 07:51 AM (UTC)