JSON

Genome sc|0000462

Name

Methanoliparum thermophilumTs

Database

NCBI Assembly

Accession

GCA_004212075.1

Genomics

Accession
NCBI Assembly:GCA_004212075.1
Type
Metagenome-Assembled Genome (MAG)
Estimated Quality Metrics
  • Completeness: 92.5%
  • Contamination: 1.3%
  • Quality: 86.0
Ribosomal and transfer RNA genes
  • 1 16S rRNA (up to 100.0%)
  • 1 23S rRNA (up to 100.0%)
  • tRNAs for 20 amino acids
Sequencing depth
11.0 ×
Source
Other features
  • G+C Content: 35.7%
  • Coding Density: 89.41%
  • Codon Table: 11
  • N50: 192,136 bp
  • Contigs: 12
  • Largest Contig: 319,195 bp
  • Assembly Length: 1,257,141 bp
  • Ambiguous Assembly Fraction: 0.0%
Submitter comments
Coverage was evaluated with Bowtie2. Completness and contamination were assessed with CheckM (v1).
Automated checks
Complete
Last modified about 1 month ago

Sample Metadata

BioSample entries
Date
Collection Date: 2015-12-08
Location
Lat Lon: 22.797 S 47.113 W
Toponym
Geo Loc Name: Brazil
Environment
Sample Type: metagenomic assembly
Isolation Source: Enrichment culture (50C) from petroleum sample
Other
Host: Not relevant
Temp: 50
Package
Ncbi Submission Package: Microbe.1.0 • Metagenome.environmental.1.0
Biosamplemodel: Microbe, viral or environmental • Metagenome or environmental
All retrieved samples
Metadata retrieved about 1 month ago


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