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Methanoliparum thermophilumTs

Citation

Formal styling
Methanoliparum thermophilumTs Borrel et al., 2019 (priority 2024)
Effective publication
Borrel et al., 2019
SeqCode status
Valid (SeqCode)
Register List
seqco.de/r:pbj4my08 (validated)
Canonical URL
https://seqco.de/i:32048

Nomenclature

Rank
Species
Syllabication
ther.mo.phi'lum
Etymology
Gr. n. thermê, heat; N.L. neut. adj. suff. -philum, friend, loving (from Gr. adj. philos -ê -on); N.L. neut. adj. thermophilum, heat-loving
Nomenclatural type
NCBI Assembly: GCA_004212075.1
Nomenclatural status
Validly published under the SeqCode

Taxonomy

Description
This organism is not isolated. It is represented by a near-complete MAG, NM1a, (GCA_004212075.1) obtained from an enrichment culture (50°C) using biodegraded oil as inoculum from Brazil. Analyses of enrichment cultures (Borrel et al., 2019; Laso-Perez et al., 2019; Zhou et al., 2022) indicate that this organism can utilize long-chain alkanes as substrate for methanogenesis.
Classification
Archaea » Methanobacteriota » Methanoliparia » Methanoliparales » Methanoliparaceae » Methanoliparum » Methanoliparum thermophilumTs
Parent
Methanoliparum gtdb

Genomics

Accession
NCBI Assembly:GCA_004212075.1
Type
Metagenome-Assembled Genome (MAG)
Estimated Quality Metrics
  • Completeness: 92.5%
  • Contamination: 1.3%
  • Quality: 86.0
Ribosomal and transfer RNA genes
  • 1 16S rRNA (up to 100.0%)
  • 1 23S rRNA (up to 100.0%)
  • tRNAs for 20 amino acids
Sequencing depth
11.0 ×
Source
Other features
  • G+C Content: 35.7%
  • Coding Density: 89.41%
  • Codon Table: 11
  • N50: 192,136 bp
  • Contigs: 12
  • Largest Contig: 319,195 bp
  • Assembly Length: 1,257,141 bp
  • Ambiguous Assembly Fraction: 0.0%
Submitter comments
Coverage was evaluated with Bowtie2. Completness and contamination were assessed with CheckM (v1).
Automated checks
Complete
See additional details
Last modified about 1 year ago

Metadata

Outside links and data sources
Search sequences
Local history
Registered
Over 2 years ago by Borrel, Guillaume
Submitted
Over 1 year ago by Borrel, Guillaume
Curators
Validated
Over 1 year ago by Palmer, Marike
Date of priority
2024-05-29 01:10 PM (UTC)

Publications
3

Citation Title
Zhou et al., 2022, Nature Non-syntrophic methanogenic hydrocarbon degradation by an archaeal species
Laso-Pérez et al., 2019, mBio Anaerobic Degradation of Non-Methane Alkanes by “ Candidatus Methanoliparia” in Hydrocarbon Seeps of the Gulf of Mexico
Borrel et al., 2019, Nature Microbiology Wide diversity of methane and short-chain alkane metabolisms in uncultured archaea
Effective publication


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