Methanoliparum thermophilum^Ts

Citation

Formal styling

Methanoliparum thermophilum^Ts Borrel et al., 2019 (valid 2024)

Effective publication

Borrel et al., 2019

SeqCode status

Valid (SeqCode)

Register List

seqco.de/r:pbj4my08 (validated)

Canonical URL

https://seqco.de/i:32048

Nomenclature

Rank

Species

Syllabication

ther.mo.phi'lum

Etymology

Gr. n. thermê, heat; N.L. neut. adj. suff. -philum, friend, loving (from Gr. adj. philos -ê -on); N.L. neut. adj. thermophilum, heat-loving

Nomenclatural type

NCBI Assembly: GCA_004212075.1

Nomenclatural status

Validly published under the SeqCode

Taxonomy

Description

This organism is not isolated. It is represented by a near-complete MAG, NM1a, (GCA_004212075.1) obtained from an enrichment culture (50°C) using biodegraded oil as inoculum from Brazil. Analyses of enrichment cultures (Borrel et al., 2019; Laso-Perez et al., 2019; Zhou et al., 2022) indicate that this organism can utilize long-chain alkanes as substrate for methanogenesis.

Classification

Archaea » Methanobacteriota » Methanoliparia » Methanoliparales » Methanoliparaceae » Methanoliparum » Methanoliparum thermophilum^Ts

Parent

Methanoliparum gtdb

Genomics

Accession

NCBI Assembly:GCA_004212075.1

Type

Metagenome-Assembled Genome (MAG)

Estimated Quality Metrics

• Completeness: 92.5%
• Contamination: 1.3%
• Quality: 86.0

Ribosomal and transfer RNA genes

• 1 16S rRNA (up to 100.0%)
• 1 23S rRNA (up to 100.0%)
• tRNAs for 20 amino acids

Sequencing depth

11.0 ×

Source

• BioSample: SAMN10390728
• BioSample: SAMN10492735

Other features

• G+C Content: 35.7%
• Coding Density: 89.41%
• Codon Table: 11
• N50: 192,136 bp
• Contigs: 12
• Largest Contig: 319,195 bp
• Assembly Length: 1,257,141 bp
• Ambiguous Assembly Fraction: 0.0%

Submitter comments

Coverage was evaluated with Bowtie2. Completness and contamination were assessed with CheckM (v1).

Automated checks

Complete

See additional details

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Last modified about 1 month ago

Metadata

Outside links and data sources

• GTDB Genome: GCA_004212075.1
• GTDB Tree: s__Methanoliparum thermophilum
• Global Biodiversity Information Facility (GBIF)
• Wikispecies: Methanoliparum thermophilum (see reference source)

Search sequences

• Seach in NCBI Nucleotide

Local history

• This name was last modified 6 months ago
• Submission process status
• Quality checks before valid publication

Registered by

Borrel, Guillaume over 1 year ago

Submitted by

Borrel, Guillaume 7 months ago

Curators

• Rodriguez-R, Luis M (genomics)
• Palmer, Marike (nomenclature)

Validated by

Palmer, Marike 6 months ago

Date of priority

2024-05-29 01:10 PM (UTC)