Genome sc|0000465

Name

Doriopsillibacter californiensis^Ts

Database

NCBI Assembly

Accession

GCA_030386295.1

Genomics

Accession

NCBI Assembly:GCA_030386295.1

Type

Single-Cell Amplified Genome (SAG)

Estimated Quality Metrics

Completeness: 94.12%
Contamination: 0.84%
Quality: 89.92

Ribosomal and transfer RNA genes

1 16S rRNA (up to 100.0%)
1 23S rRNA (up to 100.0%)
tRNAs for 20 amino acids

Sequencing depth

395.0 ×

Source

Other features

G+C Content: 46.79%
Coding Density: 91.32%
Codon Table: 11
N50: 455,906 bp
Contigs: 5
Largest Contig: 621,832 bp
Assembly Length: 1,532,643 bp
Ambiguous Assembly Fraction: 0.0065%

Automated checks

Complete

Last modified 6 months ago

Sample Metadata

BioSample entries

Date

Collection Date: 2017-06-21

Location

Lat Lon: 37° 29′ 41″ N, 122° 29′ 58″ W • 37° 29′ 41″ N, 122° 29′ 58″ W

View map of sampling locations

Toponym

Geo Loc Name: USA: Pillar Point, CA • USA: California, Pillar Point Harbor

Environment

Isolation Source: co-assembly of nearly identical multiple single-cells amplified by MDA; isolated from nudibranch mantle • tide pools

Env Broad Scale: tide pools

Env Local Scale: nudibranch

Env Medium: nudibranch mantle

Other

Host: Doriopsilla fulva

Package

Ncbi Submission Package: MISAG.host-associated.6.0

Biosamplemodel: MISAG.host-associated • Microbe, viral or environmental

All retrieved samples

Metadata retrieved 6 months ago

© 2022-2026 The SeqCode Initiative
All information contributed to the SeqCode Registry is released under the terms of the Creative Commons Attribution (CC BY) 4.0 license