Genome sc|0000465

Genomics

Accession

NCBI Assembly:GCA_030386295.1

Type

Single-Cell Amplified Genome (SAG)

Estimated Quality Metrics

• Completeness: 94.12%
• Contamination: 0.84%
• Quality: 89.92

Ribosomal and transfer RNA genes

• 1 16S rRNA (up to 100.0%)
• 1 23S rRNA (up to 100.0%)
• tRNAs for 20 amino acids

Sequencing depth

395.0 ×

Source

• BioSample: SAMN30074221

Other features

• G+C Content: 46.79%
• Coding Density: 91.32%
• Codon Table: 11
• N50: 455,906 bp
• Contigs: 5
• Largest Contig: 621,832 bp
• Assembly Length: 1,532,643 bp
• Ambiguous Assembly Fraction: 0.0065%

Automated checks

Complete

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Last modified 10 days ago

Sample Metadata

BioSample entries

• BioSample: SAMN30074221

Date

Collection Date: 2017-06-21

Location

Lat Lon: 37.49484083 N 122.49944278 W

Toponym

Geo Loc Name: USA: Pillar Point, CA

Environment

Isolation Source: co-assembly of nearly identical multiple single-cells amplified by MDA; isolated from nudibranch mantle

Env Broad Scale: tide pools

Env Local Scale: nudibranch

Env Medium: nudibranch mantle

Other

Host: Doriopsilla fulva

Package

Ncbi Submission Package: MISAG.host-associated.6.0

Biosamplemodel: MISAG.host-associated

All retrieved samples

• SAMN30074221: MISAG Single Amplified Genome sample from Candidatus Persebacteraceae bacterium Df01

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Metadata retrieved 10 days ago