SeqCode Registry
cognitis nomina
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Genomes
sc|0000465
JSON
Genome sc|0000465
Name
Doriopsillibacter californiensis
Ts
Database
NCBI Assembly
Accession
GCA_030386295.1
Genomics
Accession
NCBI Assembly:
GCA_030386295.1
Type
Single-Cell Amplified Genome (SAG)
Estimated Quality Metrics
Completeness:
94.12%
Contamination:
0.84%
Quality:
89.92
Ribosomal and transfer RNA genes
1 16S rRNA (up to 100.0%)
1 23S rRNA (up to 100.0%)
tRNAs for 20 amino acids
Sequencing depth
395.0 ×
Source
BioSample: SAMN30074221
Other features
G+C Content:
46.79%
Coding Density:
91.32%
Codon Table:
11
N50:
455,906 bp
Contigs:
5
Largest Contig:
621,832 bp
Assembly Length:
1,532,643 bp
Ambiguous Assembly Fraction:
0.0065%
Automated checks
Complete
Sample Metadata
Date
Collection Date:
2017-06-21
Location
Lat Lon:
37.49484083 N 122.49944278 W
Toponym
Geo Loc Name:
USA: Pillar Point, CA
Environment
Isolation Source:
co-assembly of nearly identical multiple single-cells amplified by MDA; isolated from nudibranch mantle
Env Broad Scale:
tide pools
Env Local Scale:
nudibranch
Env Medium:
nudibranch mantle
Other
Host:
Doriopsilla fulva
Package
Ncbi Package:
MISAG.host-associated.6.0
All retrieved samples
SAMN30074221
: MISAG Single Amplified Genome sample from Candidatus Persebacteraceae bacterium Df01
Metadata retrieved
5 months ago
© 2022-2024 The SeqCode Initiative
All information contributed to the SeqCode Registry is released under the terms of the
Creative Commons Attribution (CC BY) 4.0
license
Automated Estimates
×
This genome was automatically retrieved and processed using MiGA (The Microbial Genomes Atlas)
[1]
, and the estimate has not been overridden by the submitter.
Rodriguez-R et al, 2018, NAR.
DOI: 10.1093/nar/gky467
SAMN30074221
×
Keywords: GSC:MIxS;MISAG:6.0
isolate
Df01
isolation_source
co-assembly of nearly identical multiple single-cells amplified by MDA; isolated from nudibranch mantle
host
Doriopsilla fulva
collection_date
2017-06-21
env_broad_scale
tide pools
env_local_scale
nudibranch
env_medium
nudibranch mantle
geo_loc_name
USA: Pillar Point, CA
lat_lon
37.49484083 N 122.49944278 W
ncbi_package
MISAG.host-associated.6.0
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