Doriopsillibacter californiensis^Ts

Citation

Formal styling

Doriopsillibacter californiensis^Ts Džunková et al., 2023 (valid 2024)

Effective publication

Džunková et al., 2023

SeqCode status

Valid (SeqCode)

Register List

seqco.de/r:td4s-yi2 (validated)

Canonical URL

https://seqco.de/i:31268

Nomenclature

Rank

Species

Syllabication

ca.li.for.ni.en'sis

Etymology

N.L. masc. adj. californiensis, coming from California

Nomenclatural type

NCBI Assembly: GCA_030386295.1

Nomenclatural status

Validly published under the SeqCode

Taxonomy

Description

Doriopsillibacter californiensis (indicating host name and collection location). Belonging to Persebacteraceae, Tethybacterales, Gammaproteobacteria. The whole genome-based phylogenies enabled the assignment of the Doriopsillibacter genus. Symbiont of nudibranch Doriopsilla fulva (Dendrodorididae, Nudibranchia) collected from a tide pool at Pillar Point, California, USA (37º 29ʹ 41.427″ N, 122º 29ʹ 57.994″ W), discovered by synthase-selected single-cell genomics. Mucus-producing goblet cells of Doriopsilla fulva appear to be the primary reservoir of D. californiensis. Genome sequence available at NCBI with BioProject ID: PRJNA864331.

Classification

Bacteria » Pseudomonadota » Gammaproteobacteria » Tethybacterales » Perseibacteraceae » Doriopsillibacter » Doriopsillibacter californiensis^Ts

Parent

Doriopsillibacter

Genomics

Accession

NCBI Assembly:GCA_030386295.1

Type

Single-Cell Amplified Genome (SAG)

Estimated Quality Metrics

• Completeness: 94.12%
• Contamination: 0.84%
• Quality: 89.92

Ribosomal and transfer RNA genes

• 1 16S rRNA (up to 100.0%)
• 1 23S rRNA (up to 100.0%)
• tRNAs for 20 amino acids

Sequencing depth

395.0 ×

Source

• BioSample: SAMN30074221

Other features

• G+C Content: 46.79%
• Coding Density: 91.32%
• Codon Table: 11
• N50: 455,906 bp
• Contigs: 5
• Largest Contig: 621,832 bp
• Assembly Length: 1,532,643 bp
• Ambiguous Assembly Fraction: 0.0065%

Automated checks

Complete

See additional details

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Last modified about 1 month ago

Metadata

Outside links and data sources

• GTDB Genome: GCA_030386295.1
• Wikispecies: Doriopsillibacter californiensis (see reference source)

Search sequences

• Seach in NCBI Nucleotide

Local history

• This name was last modified 8 months ago
• Submission process status
• Quality checks before valid publication

Registered by

Dzunkova, Maria over 1 year ago

Submitted by

Dzunkova, Maria 8 months ago

Curators

• Rodriguez-R, Luis M (genomics)
• Palmer, Marike (nomenclature)

Validated by

Palmer, Marike 8 months ago

Date of priority

2024-04-22 09:53 AM (UTC)