Nanopore data has been generated from R10.4.1 chemistry flow cells. The reads have been basecalled in SUP mode

BioSample Accession(s)

SAMEA113934122, ERS15928288

ENA-CHECKLIST

ERC000011

organism

soil metagenome

collection date

2020-08-05

scientific_name

soil metagenome

geographic location (country and/or sea)

Denmark

HQ MAG for uncultured Candidatus Micrarchaeota archaeon, recovered from an environmental sample from Denmark

BioSample Accession(s)

SAMEA114828541, ERS17253409

ENA-CHECKLIST

ERC000011

binning software

MetaBAT2, GraphMB, SemiBin2, DAS Tool, mmlong2

organism

uncultured Candidatus Micrarchaeota archaeon

broad-scale environmental context

Temperate heath and scrub

assembly quality

Multiple fragments where gaps span repetitive regions. Presence of the 23S, 16S and 5S rRNA genes and at least 18 tRNAs

collection date

2020-08-05

sample derived from

ERS15928288

geographic location (longitude)

9.2476

taxonomic identity marker

multi-marker approach

binning parameters

Ensemble iterative binning using coverage and kmer

completeness score

92.73

contamination score

1.21

environmental medium

not collected

geographic location (latitude)

56.2643

scientific_name

uncultured Candidatus Micrarchaeota archaeon

local environmental context

Temperate heath

metagenomic source

soil metagenome

project name

Microflora Danica

completeness software

CheckM2

geographic location (country and/or sea)

Denmark

isolation_source

Soil

ENA-LAST-UPDATE

2023-12-07

Metadata as EBI XML

<EXPERIMENT_SET>
<EXPERIMENT accession="ERX11276180" alias="ena-EXPERIMENT-TAB-25-08-2023-08:09:17:666-4276" center_name="Center for Microbial Communities">
  <IDENTIFIERS>
    <PRIMARY_ID>ERX11276180</PRIMARY_ID>
    <SUBMITTER_ID namespace="Center for Microbial Communities">ena-EXPERIMENT-TAB-25-08-2023-08:09:17:666-4276</SUBMITTER_ID>
  </IDENTIFIERS>
  <TITLE>PromethION sequencing</TITLE>
  <STUDY_REF accession="ERP143702">
    <IDENTIFIERS>
      <PRIMARY_ID>ERP143702</PRIMARY_ID>
      <SECONDARY_ID>PRJEB58634</SECONDARY_ID>
    </IDENTIFIERS>
  </STUDY_REF>
  <DESIGN>
    <DESIGN_DESCRIPTION/>
    <SAMPLE_DESCRIPTOR accession="ERS15928288">
      <IDENTIFIERS>
        <PRIMARY_ID>ERS15928288</PRIMARY_ID>
        <EXTERNAL_ID namespace="BioSample">SAMEA113934122</EXTERNAL_ID>
      </IDENTIFIERS>
    </SAMPLE_DESCRIPTOR>
    <LIBRARY_DESCRIPTOR>
      <LIBRARY_NAME>LIB-CHJ-R1041-MFD09222</LIBRARY_NAME>
      <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
      <LIBRARY_SOURCE>METAGENOMIC</LIBRARY_SOURCE>
      <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
      <LIBRARY_LAYOUT>
        <SINGLE/>
      </LIBRARY_LAYOUT>
    </LIBRARY_DESCRIPTOR>
  </DESIGN>
  <PLATFORM>
    <OXFORD_NANOPORE>
      <INSTRUMENT_MODEL>PromethION</INSTRUMENT_MODEL>
    </OXFORD_NANOPORE>
  </PLATFORM>
  <EXPERIMENT_LINKS>
    <EXPERIMENT_LINK>
      <XREF_LINK>
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    <EXPERIMENT_LINK>
      <XREF_LINK>
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        <ID>ERA27026999</ID>
      </XREF_LINK>
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    <EXPERIMENT_LINK>
      <XREF_LINK>
        <DB>ENA-FASTQ-FILES</DB>
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  <EXPERIMENT_ATTRIBUTES>
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      <VALUE>4</VALUE>
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</EXPERIMENT>
</EXPERIMENT_SET>

Metadata as EBI XML

<EXPERIMENT_SET>
<EXPERIMENT accession="ERX11276181" alias="ena-EXPERIMENT-TAB-25-08-2023-08:09:17:667-4278" center_name="Center for Microbial Communities">
  <IDENTIFIERS>
    <PRIMARY_ID>ERX11276181</PRIMARY_ID>
    <SUBMITTER_ID namespace="Center for Microbial Communities">ena-EXPERIMENT-TAB-25-08-2023-08:09:17:667-4278</SUBMITTER_ID>
  </IDENTIFIERS>
  <TITLE>PromethION sequencing</TITLE>
  <STUDY_REF accession="ERP143702">
    <IDENTIFIERS>
      <PRIMARY_ID>ERP143702</PRIMARY_ID>
      <SECONDARY_ID>PRJEB58634</SECONDARY_ID>
    </IDENTIFIERS>
  </STUDY_REF>
  <DESIGN>
    <DESIGN_DESCRIPTION/>
    <SAMPLE_DESCRIPTOR accession="ERS15928288">
      <IDENTIFIERS>
        <PRIMARY_ID>ERS15928288</PRIMARY_ID>
        <EXTERNAL_ID namespace="BioSample">SAMEA113934122</EXTERNAL_ID>
      </IDENTIFIERS>
    </SAMPLE_DESCRIPTOR>
    <LIBRARY_DESCRIPTOR>
      <LIBRARY_NAME>LIB-CHJ-R1041-MFD09222</LIBRARY_NAME>
      <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
      <LIBRARY_SOURCE>METAGENOMIC</LIBRARY_SOURCE>
      <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
      <LIBRARY_LAYOUT>
        <SINGLE/>
      </LIBRARY_LAYOUT>
    </LIBRARY_DESCRIPTOR>
  </DESIGN>
  <PLATFORM>
    <OXFORD_NANOPORE>
      <INSTRUMENT_MODEL>PromethION</INSTRUMENT_MODEL>
    </OXFORD_NANOPORE>
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  <EXPERIMENT_LINKS>
    <EXPERIMENT_LINK>
      <XREF_LINK>
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    </EXPERIMENT_LINK>
    <EXPERIMENT_LINK>
      <XREF_LINK>
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        <ID>ERA27026999</ID>
      </XREF_LINK>
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    <EXPERIMENT_LINK>
      <XREF_LINK>
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      </XREF_LINK>
    </EXPERIMENT_LINK>
    <EXPERIMENT_LINK>
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    </EXPERIMENT_LINK>
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  <EXPERIMENT_ATTRIBUTES>
    <EXPERIMENT_ATTRIBUTE>
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      <VALUE>4</VALUE>
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Metadata as EBI XML

<EXPERIMENT_SET>
<EXPERIMENT accession="ERX11276182" alias="ena-EXPERIMENT-TAB-25-08-2023-08:09:17:667-4280" center_name="Center for Microbial Communities">
  <IDENTIFIERS>
    <PRIMARY_ID>ERX11276182</PRIMARY_ID>
    <SUBMITTER_ID namespace="Center for Microbial Communities">ena-EXPERIMENT-TAB-25-08-2023-08:09:17:667-4280</SUBMITTER_ID>
  </IDENTIFIERS>
  <TITLE>PromethION sequencing</TITLE>
  <STUDY_REF accession="ERP143702">
    <IDENTIFIERS>
      <PRIMARY_ID>ERP143702</PRIMARY_ID>
      <SECONDARY_ID>PRJEB58634</SECONDARY_ID>
    </IDENTIFIERS>
  </STUDY_REF>
  <DESIGN>
    <DESIGN_DESCRIPTION/>
    <SAMPLE_DESCRIPTOR accession="ERS15928288">
      <IDENTIFIERS>
        <PRIMARY_ID>ERS15928288</PRIMARY_ID>
        <EXTERNAL_ID namespace="BioSample">SAMEA113934122</EXTERNAL_ID>
      </IDENTIFIERS>
    </SAMPLE_DESCRIPTOR>
    <LIBRARY_DESCRIPTOR>
      <LIBRARY_NAME>LIB-CHJ-R1041-MFD09222</LIBRARY_NAME>
      <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
      <LIBRARY_SOURCE>METAGENOMIC</LIBRARY_SOURCE>
      <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
      <LIBRARY_LAYOUT>
        <SINGLE/>
      </LIBRARY_LAYOUT>
    </LIBRARY_DESCRIPTOR>
  </DESIGN>
  <PLATFORM>
    <OXFORD_NANOPORE>
      <INSTRUMENT_MODEL>PromethION</INSTRUMENT_MODEL>
    </OXFORD_NANOPORE>
  </PLATFORM>
  <EXPERIMENT_LINKS>
    <EXPERIMENT_LINK>
      <XREF_LINK>
        <DB>ENA-SAMPLE</DB>
        <ID>ERS15928288</ID>
      </XREF_LINK>
    </EXPERIMENT_LINK>
    <EXPERIMENT_LINK>
      <XREF_LINK>
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    <EXPERIMENT_LINK>
      <XREF_LINK>
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      </XREF_LINK>
    </EXPERIMENT_LINK>
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  <EXPERIMENT_ATTRIBUTES>
    <EXPERIMENT_ATTRIBUTE>
      <TAG>ENA-STATUS-ID</TAG>
      <VALUE>4</VALUE>
    </EXPERIMENT_ATTRIBUTE>
  </EXPERIMENT_ATTRIBUTES>
</EXPERIMENT>
</EXPERIMENT_SET>

Metadata as EBI XML

<EXPERIMENT_SET>
<EXPERIMENT accession="ERX11420358" alias="ena-EXPERIMENT-TAB-11-09-2023-14:05:37:979-28707" center_name="Center for Microbial Communities">
  <IDENTIFIERS>
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  </IDENTIFIERS>
  <TITLE>PromethION sequencing</TITLE>
  <STUDY_REF accession="ERP143702">
    <IDENTIFIERS>
      <PRIMARY_ID>ERP143702</PRIMARY_ID>
      <SECONDARY_ID>PRJEB58634</SECONDARY_ID>
    </IDENTIFIERS>
  </STUDY_REF>
  <DESIGN>
    <DESIGN_DESCRIPTION/>
    <SAMPLE_DESCRIPTOR accession="ERS15928288">
      <IDENTIFIERS>
        <PRIMARY_ID>ERS15928288</PRIMARY_ID>
        <EXTERNAL_ID namespace="BioSample">SAMEA113934122</EXTERNAL_ID>
      </IDENTIFIERS>
    </SAMPLE_DESCRIPTOR>
    <LIBRARY_DESCRIPTOR>
      <LIBRARY_NAME>LIB-CHJ-R1041-MFD09222</LIBRARY_NAME>
      <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
      <LIBRARY_SOURCE>METAGENOMIC</LIBRARY_SOURCE>
      <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
      <LIBRARY_LAYOUT>
        <SINGLE/>
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    </LIBRARY_DESCRIPTOR>
  </DESIGN>
  <PLATFORM>
    <OXFORD_NANOPORE>
      <INSTRUMENT_MODEL>PromethION</INSTRUMENT_MODEL>
    </OXFORD_NANOPORE>
  </PLATFORM>
  <EXPERIMENT_LINKS>
    <EXPERIMENT_LINK>
      <XREF_LINK>
        <DB>ENA-SAMPLE</DB>
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      </XREF_LINK>
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    <EXPERIMENT_LINK>
      <XREF_LINK>
        <DB>ENA-SUBMISSION</DB>
        <ID>ERA27203171</ID>
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    <EXPERIMENT_LINK>
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      <XREF_LINK>
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      </XREF_LINK>
    </EXPERIMENT_LINK>
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  <EXPERIMENT_ATTRIBUTES>
    <EXPERIMENT_ATTRIBUTE>
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      <VALUE>4</VALUE>
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</EXPERIMENT_SET>