Genome sc|0000471

Genomics

Accession

NCBI Assembly:GCA_030408475.1

Type

Metagenome-Assembled Genome (MAG)

Estimated Quality Metrics

• Completeness: 91.55%
• Contamination: 0.0%
• Quality: 91.55

Ribosomal and transfer RNA genes

• 0 16S rRNAs
• 0 23S rRNAs
• tRNAs for 20 amino acids

Sequencing depth

158.0 ×

Source

• SRA: SRR3080743

Other features

• G+C Content: 36.81%
• Coding Density: 91.04%
• Codon Table: 11
• N50: 42,111 bp
• Contigs: 71
• Largest Contig: 203,538 bp
• Assembly Length: 1,800,129 bp
• Ambiguous Assembly Fraction: 0.0%

Submitter comments

CheckM was used to assess the completeness and contamination of the genome. 

Automated checks

Complete

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Last modified 2 months ago

Sample Metadata

BioSample entries

• BioSample: SRS1214574

Date

Collection Date: 2003

Location

Not detected

Toponym

Geo Loc Name: USA

Environment

Sample Type: cell culture

Isolation Source: salt pond

Other

Host: Alexandrium fundyense

Package

Ncbi Submission Package: Microbe.1.0

Biosamplemodel: Microbe, viral or environmental

All retrieved samples

• SRS1214574: Amoebophrya isolated from Alexandrium fundyense

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Metadata retrieved 2 months ago