SeqCode Registry
cognitis nomina
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Genomes
sc|0000471
JSON
Genome sc|0000471
Name
Amphritriteisimkania amoebophyrae
Ts
Database
NCBI Assembly
Accession
GCA_030408475.1
Genomics
Accession
NCBI Assembly:
GCA_030408475.1
Type
Metagenome-Assembled Genome (MAG)
Estimated Quality Metrics
Completeness:
91.55%
Contamination:
0.0%
Quality:
91.55
Ribosomal and transfer RNA genes
0 16S rRNAs
0 23S rRNAs
tRNAs for 20 amino acids
Sequencing depth
158.0 ×
Source
SRA: SRR3080743
Other features
G+C Content:
36.81%
Coding Density:
91.04%
Codon Table:
11
N50:
42,111 bp
Contigs:
71
Largest Contig:
203,538 bp
Assembly Length:
1,800,129 bp
Ambiguous Assembly Fraction:
0.0%
Submitter comments
CheckM was used to assess the completeness and contamination of the genome.
Automated checks
Complete
Sample Metadata
Date
Collection Date:
2003
Location
Not detected
Toponym
Geo Loc Name:
USA
Environment
Sample Type:
cell culture
Isolation Source:
salt pond
Other
Host:
Alexandrium fundyense
Package
Ncbi Submission Package:
Microbe.1.0
Biosamplemodel:
Microbe, viral or environmental
All retrieved samples
SRS1214574
: Amoebophrya isolated from Alexandrium fundyense
Metadata retrieved
10 months ago
© 2022-2024 The SeqCode Initiative
All information contributed to the SeqCode Registry is released under the terms of the
Creative Commons Attribution (CC BY) 4.0
license
Automated Estimates
×
This genome was automatically retrieved and processed using MiGA (The Microbial Genomes Atlas)
[1]
, and the estimate has not been overridden by the submitter.
Rodriguez-R et al, 2018, NAR.
DOI: 10.1093/nar/gky467
SRS1214574
×
Retrieved via SRR3080743
strain
AT5.2
INSDC secondary accession
SRS1214574
NCBI submission package
Microbe.1.0
organism
Amoebophrya sp. AT5.2
collection date
2003
isolation-source
salt pond
geo loc name
USA
host
Alexandrium fundyense
sample type
cell culture
BioSampleModel
Microbe, viral or environmental
ENA-FIRST-PUBLIC
2015-12-16
ENA-LAST-UPDATE
2018-12-17
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